Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0384 ATGGATACTCGTAGATCGAGAGGTATCGAACCCGGTGCGAAGAAGCCTCGATTGATCAACGAGCTTGACCGCGGTTCGATTCTCGGTCCACCACCTTTGCCTCGGCGACAAGCGGCTTCTGGGGTTACAAAATTGGGGTCTGCGAGATTTGGAGTAAATGGGAGAGACCCTGAGAAGAGTGATTTGGGGCACGGTGTTGACGACGATGATGATGATGGTGGTTACCACCCGCAGCCGCCACCACACCAAGAGCTTGTGGTTCAGTATAAGACTGCGCTGGCTGAATTGACTTTCAATTCGAAGCCGATAATTACGAATTTGACTATAATTGCTGGAGAGAATGTAGCTGCTGCTAAGGCAGTTGCTGGGATTGTTTGTTCTAATATTGTTGAGGTTCCAAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGACAGACTACCTGAGGTATTCTGTGAGGCATACAGACAGGTTGATTCTCCGGTGCATTCAAACATGAGACATCTTTTTGGGACTTGGAAAGGTGTCTTTCCTACCCAGACTCTTCAGATGATTGAGAAGGAACTTGGCTTTACTTCTGCAGCCAATGGTTCAGCTTCCACATCTGCTTCAGTCAGGAGTGACTCGCAGTCGCAACGCCCACCCAATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGTCTTCAACAGTCCATCAAGACTAAAGGAGGAGTAAATGATATGAATGAAGCTTTTTTAAACTCAAAAGAGGACCCAGAGAGAGCTTTGGGTTCTGCACGACCATTGCTGGATCCTAGGATTACCATGAAAAATAATCTACGCATTAATAGAGATGCATTTAATGATTCTGTTCCTGAAAAGAGCATTCGTGAGTCCTATGGAGGCAATCAATATAGTTCTGATACTTCAAATAAATTGAGTTTAGTTGTTGGAAGAACTTTCGGTAGGGTCACTGAGTTAGGACATGACAAACCTTGGTATAAAGCAGGTGGTATTGTTGCAGAGACCAGATCTGGGCAAGGAATTGATTTCAGTGTCAAGCATGGTTTTTCAAATCATGAAGCATTGAAGTCCATGAAATTGGATGCACATCGTCAGCCGACACTGAACATAAATAATAAAAGGAGCAGTGTTATGTCAAGTAACTGGAAAAATTCTGAGGAGGAGGAGTTCACGTGGGATGAGATGAACACTGGGTTGACTGGTCATGGTGCACCCAACGTCTCTAATAACTTGAGCACAGACACATGGACTGCTGATGATGAGAATTTGGAAGGTGAAGATCACCTACAAATTGCACACACTTTCGGGGAAAAGGTTGATAGAGAAATATTCACTGTTAAGAAACAACTACCTGCATTTGTGGGCCATCAATCGCTGTCATGGAAATTGCAGGATCAACACTCAAATGATAAGTTGAATCTGAAGCCAGGTCGCTCAGAAGAACTTTTGTCCAATTCTGGTGGGATGCAGAATCGGTCCTTCATGCCAAATGCAATGATAGGAATGACCGAAGTTATGAGGCAACAGCAATTTGATTCTGCGAGAGCTGAATCCCCATCACTGCCAGTAAATGTGCGCCACCCTCATCCAATGCAAAATTTGGCTGAGCAAGATCGTCCCCAGACTCGTAAAGCATCTCAGTATTTGGGAACTCTACAGAGCCAACATACTAGAGATTCTTCAATTGCCCTTCCTCCAAATGTCCAGGTTGGTAACTTGCGAAGATCACAGGAAAGGGACTTGCAGGGTCCATTATCTTCGGCAGCTTCTTTTCAGCCAAAGCTTCAACAGAGGCTGGGCCCTTCTCAGGCTGAAGTTACTGTTAAACCAAAGAAGCCACCCCAGTCTAAAGTTACTCTAGCCAGGAAAACTTCGGAACAGTCAACGACAAGTAGTATGCCAGCTGCAGCTGTGAAAAAGGGTATATCACCCAACAAATCAATTATTAGTAGTCTTCCTACTACAAGTAGTCTGGATACAAGGAATGTTCAACCTCAATTAGAGGTTAGGCCTACTCGGTCAAGTGGGCCTTCCCCGACCACATTAATTTCTTCAGCGCCTGTGGTTGCATCCCCATCTTCATTAGGTCCTTTGAATGACGATTCACCTACTCTGCCAAAAATGACTCAAAGAAAGGCTGGGCAGCCACCAAGGGGGTCTACTCAACTACCAGCTTCCTCTAATGGGAGCAGTGCCCGAGATCCGCCCTCAAATGCCAGCAATAATAATACCTCAAATCCAATTGCCAACCTTTTGAGCTCATTAGTTGCAAAGGGATTGATATCTTCAAAAACAGAGTCACCGACTAAGGTACCAACTGAGGTGCTGAGTCAATTGGAAGAGAAAACGGAAAGCATTGCTGCCAGTAGCTCTTCGCCAGTCGCTTCAGTTTCTGTTTCTGCAGCTGTCCCAATACCATCTTCCAGAGATGAGGTAGATGATACTGCAAAATCGTCACTTGCCTTATCTAAATCAACCAGCATGGAAATCAGAAATCTCATTGGCTTTGATTTTAAGCCAGATGTAATCCGAGAAATGCATCCACTTGTAATTAGCACCTTATTGGATGATCTCCCACATCATTGCACAGTTTGTGGTACTCGGCTTAAACTACAAGAACAGTTTGATAGACACTTGGAGTGGCATGCCACTAGAGAAAAAGAGCAAAGTGGTCTAATTACGGCATCAAGAAAATGGTATGCAAAATCAAATGATTGGATTGCTGGCAAGGATGAGTATCCATCTGAGCATGAGCTCACTGATTCTGTAGATGTACATGACAAGGAAACAGAGGAGAATCAATTGGATACTACTGTTGTAGCTGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTCTACTGCCGGGAAAGGGATGAATGGATGTTCAAAGGGGCTGTATACTTGAACGACACAGATGGCAATAGTGAGATGGAAAGTAGAAATCCGGGTCCCATTATTCACGCTAGATGCTTATCAGAGAACCCGATATCCAGTGTCACCTAG 3078 0.4428 MDTRRSRGIEPGAKKPRLINELDRGSILGPPPLPRRQAASGVTKLGSARFGVNGRDPEKSDLGHGVDDDDDDGGYHPQPPPHQELVVQYKTALAELTFNSKPIITNLTIIAGENVAAAKAVAGIVCSNIVEVPSEQKLPSLYLLDSIVKNIGRDYIKYFADRLPEVFCEAYRQVDSPVHSNMRHLFGTWKGVFPTQTLQMIEKELGFTSAANGSASTSASVRSDSQSQRPPNSIHVNPKYLERQRLQQSIKTKGGVNDMNEAFLNSKEDPERALGSARPLLDPRITMKNNLRINRDAFNDSVPEKSIRESYGGNQYSSDTSNKLSLVVGRTFGRVTELGHDKPWYKAGGIVAETRSGQGIDFSVKHGFSNHEALKSMKLDAHRQPTLNINNKRSSVMSSNWKNSEEEEFTWDEMNTGLTGHGAPNVSNNLSTDTWTADDENLEGEDHLQIAHTFGEKVDREIFTVKKQLPAFVGHQSLSWKLQDQHSNDKLNLKPGRSEELLSNSGGMQNRSFMPNAMIGMTEVMRQQQFDSARAESPSLPVNVRHPHPMQNLAEQDRPQTRKASQYLGTLQSQHTRDSSIALPPNVQVGNLRRSQERDLQGPLSSAASFQPKLQQRLGPSQAEVTVKPKKPPQSKVTLARKTSEQSTTSSMPAAAVKKGISPNKSIISSLPTTSSLDTRNVQPQLEVRPTRSSGPSPTTLISSAPVVASPSSLGPLNDDSPTLPKMTQRKAGQPPRGSTQLPASSNGSSARDPPSNASNNNTSNPIANLLSSLVAKGLISSKTESPTKVPTEVLSQLEEKTESIAASSSSPVASVSVSAAVPIPSSRDEVDDTAKSSLALSKSTSMEIRNLIGFDFKPDVIREMHPLVISTLLDDLPHHCTVCGTRLKLQEQFDRHLEWHATREKEQSGLITASRKWYAKSNDWIAGKDEYPSEHELTDSVDVHDKETEENQLDTTVVADENQCLCVLCGELFEDVYCRERDEWMFKGAVYLNDTDGNSEMESRNPGPIIHARCLSENPISSVT* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0384 1025 MobiDBLite consensus disorder prediction 663 765 - -
Lan9g0384 1025 Pfam CID domain 91 199 IPR006569 -
Lan9g0384 1025 CDD CID_Pcf11 88 198 - -
Lan9g0384 1025 ProSiteProfiles CID domain profile. 81 209 IPR006569 -
Lan9g0384 1025 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 7 1024 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lan9g0384 1025 SMART 558neu5 84 206 IPR006569 -
Lan9g0384 1025 MobiDBLite consensus disorder prediction 54 77 - -
Lan9g0384 1025 Gene3D - 78 206 IPR008942 -
Lan9g0384 1025 MobiDBLite consensus disorder prediction 212 234 - -
Lan9g0384 1025 MobiDBLite consensus disorder prediction 1 82 - -
Lan9g0384 1025 MobiDBLite consensus disorder prediction 528 561 - -
Lan9g0384 1025 MobiDBLite consensus disorder prediction 1 21 - -
Lan9g0384 1025 SUPERFAMILY ENTH/VHS domain 81 203 IPR008942 -
Lan9g0384 1025 MobiDBLite consensus disorder prediction 212 238 - -
Lan9g0384 1025 MobiDBLite consensus disorder prediction 637 655 - -
Lan9g0384 1025 ProSitePatterns Zinc finger C2H2 type domain signature. 881 901 IPR013087 -
Lan9g0384 1025 MobiDBLite consensus disorder prediction 594 622 - -
Lan9g0384 1025 MobiDBLite consensus disorder prediction 594 765 - -
Lan9g0384 1025 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 7 1024 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0384 Lan-Chr9 5675734 5682424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0384 68 418 C2H2 Transcription Factor Family AT4G04885 38.701 1.64e-57 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0384 K14400 - gmx:100788958 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0384 9 5675734 5682424 Lan5g0278 5 3828854 3837913 LSH
Lan9g0384 9 5675734 5682424 Lan8g1181 8 16723491 16730568 PCT
Lan8g1181 8 16723491 16730568 Lan9g0384 9 5675734 5682424 PCT