Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0366 ATGTCCGGCGGCGCTAGACCTCCGAACCGCCGTCAACCTCCGCCGAGTGAAGGTTCGGTCATTTCGAACCGGCCGCCGCTGAAGCGTAACCTCGCCTTCGCATCGACTAAGCCGCCGTTTGCTCCGCCGTATGAATACCGTAGCTTCTCCGATTCCCGACCCTCCGGTCAAGAGGATGAAGCTGTTGTTGTTAGATCACCATATATGAAGGTGAAGAATGGACTGAATGGCACTGAAGGAGAGTCAAAGGAGCCGAGTCACAGTCTTGGATACAATAATGTAATTAATAATCCGTTGAACACTCCTGTGTCTAAAAAAGGGGGAAGGACATATAATAAAGCAAGGGTTCCAAGGGATGGTAGATCTGCTCCACCGACACCGATCTCAGAAGCTGGATCCCCTTCTCCTGCTAGCAACTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATTAATTTGCTCAAGCATGCAGAGGGTGGCAATCTTGACCTAAATAATGCAGCAGAGACCTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTAATTGAGAAGAAGATCAAGAACAATATACATTGGAAGGGAGTTGATTGTTCTTCATCTGGTGAGCAAAATGGTGATGTCTCTATGCTGAAGGAAGAAGTTGAAAAACTTTCTTTGGAAGAGTGCAGATTAGATGATCAAATAAGCGAAATGCAAGAAAGGCTGAGGAGTTTGAGTGAAGATGAAAACAAAAAGAAGTTTTTTTTCGTAACCGAAGATGATATTAAGTCTCTACCATGCTTCCAGAATGAAACTCTAATAGCAATCAAAGCTCCACATGGAACCACTCTGGAAGTTCCTGAACCTGAGGAAGCTGTTGACTATCCACAGAGGAGATATCGGGTCATTCTTAGAAGCACAATGGGTCCAATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGATATGAGCTTGCAACATGCTTCAAGTTCAGAGTCCAACGAGCGTCTAGCAACAGACGTCATTCCTGTTGAAAATAGTTATGACAGCCTTGAACCTCAAGCTCCACACTCTTCTCATAAATTCTCTGATATAAATAGTGCACAAGAGTTTGGTGGGGGCATGATGAAAATTGTTCCTTCAGAGGCTGATACTGATGCAGATTATTGGCTTCTATCAGATGCTGGAGCTAGCATAACAGATATATGGAAAACAGATTCTGTTGTGGATTGGAATGCAGTGGACATACTTGATCCTGACTTTGGAATCATCTCAACGCCAAAAACTCCATCATCTCAGTTTTCTGAAGCACCACCTGCAGTAGATAATGTTACTCAAAGGTGA 1368 0.4342 MSGGARPPNRRQPPPSEGSVISNRPPLKRNLAFASTKPPFAPPYEYRSFSDSRPSGQEDEAVVVRSPYMKVKNGLNGTEGESKEPSHSLGYNNVINNPLNTPVSKKGGRTYNKARVPRDGRSAPPTPISEAGSPSPASNCRYDSSLGLLTKKFINLLKHAEGGNLDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKIKNNIHWKGVDCSSSGEQNGDVSMLKEEVEKLSLEECRLDDQISEMQERLRSLSEDENKKKFFFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRVILRSTMGPIDVYLISQFEEKFEDMSLQHASSSESNERLATDVIPVENSYDSLEPQAPHSSHKFSDINSAQEFGGGMMKIVPSEADTDADYWLLSDAGASITDIWKTDSVVDWNAVDILDPDFGIISTPKTPSSQFSEAPPAVDNVTQR* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0366 455 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Lan9g0366 455 MobiDBLite consensus disorder prediction 79 107 - -
Lan9g0366 455 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Lan9g0366 455 MobiDBLite consensus disorder prediction 1 137 - -
Lan9g0366 455 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Lan9g0366 455 MobiDBLite consensus disorder prediction 435 455 - -
Lan9g0366 455 SUPERFAMILY E2F-DP heterodimerization region 219 323 IPR037241 -
Lan9g0366 455 PANTHER TRANSCRIPTION FACTOR E2F 25 441 IPR015633 GO:0000978|GO:0006357
Lan9g0366 455 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Lan9g0366 455 Gene3D - 135 209 IPR036388 -
Lan9g0366 455 CDD E2F_DD 222 323 IPR032198 GO:0046983
Lan9g0366 455 Gene3D - 214 323 - -
Lan9g0366 455 PANTHER TRANSCRIPTION FACTOR E2FB 25 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0366 Lan-Chr9 5511719 5516388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0366 25 452 E2F-DP Transcription Factor Family AT2G36010 52.155 3.12e-142 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan9g0366 E2F_CC-MB 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0366 K06620 - gmx:100811762 594.734