Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0360 ATGAACATGAGTGATGAAATTGATGTTCCACCCTTCTTTCTTTGCCCTATCTCATTAGAAATCATGAAGGACCCAGTTACTATCTCCACAGGCATCACCTATGACCGAGAGAGCATTGAGAAATGGCTTTTCACTGAAAAAAACAAGACATGTCCTATAACAAAACAACCCTTCTCAGATTCCATTGATCTCACTCCAAACCATACCCTTAGAAGACTTATACAAACTTGGTGTACTATGAATGCTTCTCATGGCATAGAAAGAATTCCAACTCCAAAACCTCAAGTCAACAAAATACAAATAACAAAGATCCTCAAAGATGCTTATCATTCACCTCTTTTGCTGATCAAATCTCTGAGTAGGCTCAAATCCATCGCTTCTGGTAGCGAAGCGAATAAACGTTGCATGGAAGCTGCAGGTGTTGTTGAGTTCTTAGCATCAGTTGTAATAAGCAACATACACAACAATGATTCTGCAACAAGTGCTGAAGATGAAGCTTTAAGTATCCTCCATGATCTTCATGTATCAGAAGCTGGTTTGAAGATTCTGCTAGGGTTCAAAAACGGTGAGTTTATTGAATCCTTAACAAGGGTGATGCAAAAGAGTATCTATGAGTCAAGAGTTTATGCATTGTTCTTGCTGAAATCAATGTCTGAAGTAGCTGAACCAGTGCACTTGTTCCATATAAGAACCGAGTTATTCATGGAGTTAGCACATATCTTAAAAGATCAAATTTCACATAAGGTTTCAAAGGCAACACTTCAGACACTAATAGAACTGTGTCCTTGGGGTAGAAGCAGGATCAAAGCTGTGGAATCAGGTGCTGTTTCTATTCTCATAGAGCTTCTTCTTGATTGCAAAGAAAGAAAGCCTTGTGAAATGATGCTTGTGTTGTTGGAGTTGCTATGCCAATGTGCTGAGGGAAGAGCTGAACTTTTAAGCCATGGTGCTGGGTTAGCTATAGTGTCCAAAAAGATTCTTAGGGTTTCTACAATGTCAAATGATAGGGCTGTGAGGATTTTATTATCTGTTTCTAGATTCTCTGCAACTCCAAGTGTTGTTCAAGAAATGTTGAAAATAGGTGTAGTGACTAAACTTTGTTTGATGCTTCAAGTGGATAGTGGAAACAAGGCCAAGGAGAAAGCAATGGAGATACTCAAACTTCATGGTAGAGTATGGAGGGATTCTCCTTGCATACCCAACAATTTGATTTCTTCATATCCAGCTTATGTTTGA 1236 0.3883 MNMSDEIDVPPFFLCPISLEIMKDPVTISTGITYDRESIEKWLFTEKNKTCPITKQPFSDSIDLTPNHTLRRLIQTWCTMNASHGIERIPTPKPQVNKIQITKILKDAYHSPLLLIKSLSRLKSIASGSEANKRCMEAAGVVEFLASVVISNIHNNDSATSAEDEALSILHDLHVSEAGLKILLGFKNGEFIESLTRVMQKSIYESRVYALFLLKSMSEVAEPVHLFHIRTELFMELAHILKDQISHKVSKATLQTLIELCPWGRSRIKAVESGAVSILIELLLDCKERKPCEMMLVLLELLCQCAEGRAELLSHGAGLAIVSKKILRVSTMSNDRAVRILLSVSRFSATPSVVQEMLKIGVVTKLCLMLQVDSGNKAKEKAMEILKLHGRVWRDSPCIPNNLISSYPAYV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0360 411 PANTHER WDSAM1 PROTEIN 5 408 IPR045185 GO:0061630
Lan9g0360 411 Gene3D - 99 396 IPR011989 -
Lan9g0360 411 SUPERFAMILY RING/U-box 6 85 - -
Lan9g0360 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 5 408 - -
Lan9g0360 411 CDD RING-Ubox_PUB 13 56 IPR045210 -
Lan9g0360 411 Pfam U-box domain 9 81 IPR003613 GO:0004842|GO:0016567
Lan9g0360 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Lan9g0360 411 ProSiteProfiles U-box domain profile. 8 84 IPR003613 GO:0004842|GO:0016567
Lan9g0360 411 SUPERFAMILY ARM repeat 102 386 IPR016024 -
Lan9g0360 411 SMART Ubox_2 12 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0360 Lan-Chr9 5446331 5448207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0360 3 409 U-box Gene Family AT3G52450 56.881 3.83e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0360 - - gmx:100811258 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0360 9 5446331 5448207 Lan5g0308 5 4792408 4794015 LSH
Lan9g0360 9 5446331 5448207 Lan19g0349 19 4258325 4259939 LSH
Lan9g0360 9 5446331 5448207 Lan9g0360 9 5446331 5448207 PCT
Lan9g0360 9 5446331 5448207 Lan5g0308 5 4792408 4794015 PCT
Lan9g0360 9 5446331 5448207 Lan19g0349 19 4258325 4259939 PCT