Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0358 ATGGAGATGCAAAGTGTTTATCTTAAAGGGCATGAAGGAATTCATCACAATTCTATTGGGCAGTTTTCTCATGCAAATTCAGCACCATGGTGGAGTTCCTTTGCATCTGAATCTGCTTATGGTGCTGAATCTTATGGTCAAATGAAACCATTTTCATTGGAGTTTGCAAACTATGAAGATCATCTTAATGATACTAAGAAATCAGCAAGAGGAGCTGAACAAGTGTTTGGTAAAGGATATACAACTCAATTTACCATCTTTTCAGATATTTTTAAAATGTCAGGTGGTGCACAAAAGCCTCAAGCAACCACATCCCTGCAATCATCACTTACTGATACCAACACTCATTTTGAGCTAGGATTTACTCAACCAATGATCTCAGCAAAATATCCTTATGCTGACCAATTCTATGGACTCTTCTCAACTTATGTACCTCAAATCTCGGGACGTATAATGCTTCCACTTAACATGGCCTCAGATGACGGACCAATTTATGTTAATGCTAAGCAGTACCATGGAATCATACGGCGTAGGCAGTCGCGAGCGAAAGCTGTACTTGATAACAAATCGATAAAACGTCGCAAGCCCTATATGCATGAATCACGCCATCGCCATGCGATGCGGCGACCAAGAGGATGTGGTGGTCGATTCCTGAACACAAGGAATTATGCTAATGGAAATGGTAAAAGTGGAAATGAAGTGAACAAAAGTAGTGGTCAACAATTGCACTCCAGTGGCTCTCAGGGTTCCGAAATCCTGCAATCTGAGGTTGGAACTTTGAATTCATCAAAGGAGACTAATGGCAACAGTCCTAATATTTCAGGATCAGAGGTAACTAGCATGTACTCACATGGAGGTCTCGACAGCTTCACATTCAATCATATTGGTTCTGAGGCTGTCCACTCTCTAGCCGATATAATAGACGGTGGGCGTGGTATCATCACGCCCACCAAATGGGTTGCAGCAGGTGGTAACTGCTACAACCTTAATATTTGA 996 0.4177 MEMQSVYLKGHEGIHHNSIGQFSHANSAPWWSSFASESAYGAESYGQMKPFSLEFANYEDHLNDTKKSARGAEQVFGKGYTTQFTIFSDIFKMSGGAQKPQATTSLQSSLTDTNTHFELGFTQPMISAKYPYADQFYGLFSTYVPQISGRIMLPLNMASDDGPIYVNAKQYHGIIRRRQSRAKAVLDNKSIKRRKPYMHESRHRHAMRRPRGCGGRFLNTRNYANGNGKSGNEVNKSSGQQLHSSGSQGSEILQSEVGTLNSSKETNGNSPNISGSEVTSMYSHGGLDSFTFNHIGSEAVHSLADIIDGGRGIITPTKWVAAGGNCYNLNI* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0358 331 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 330 IPR001289 GO:0003700|GO:0006355
Lan9g0358 331 Gene3D - 161 221 - -
Lan9g0358 331 MobiDBLite consensus disorder prediction 195 211 - -
Lan9g0358 331 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Lan9g0358 331 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Lan9g0358 331 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 4 330 - -
Lan9g0358 331 MobiDBLite consensus disorder prediction 220 251 - -
Lan9g0358 331 MobiDBLite consensus disorder prediction 192 251 - -
Lan9g0358 331 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Lan9g0358 331 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Lan9g0358 331 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0358 Lan-Chr9 5417615 5421241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0358 27 324 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.038 3.95e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lan9g0358 CBFB_NFYA 6.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0358 K08064 - gmx:100815382 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0358 9 5417615 5421241 Lan5g1068 5 23988933 23992457 LSH
Lan9g0358 9 5417615 5421241 Lan9g0358 9 5417615 5421241 PCT
Lan5g1068 5 23988933 23992457 Lan9g0358 9 5417615 5421241 PCT
Lan9g0358 9 5417615 5421241 Lan5g1068 5 23988933 23992457 PCT