Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0351 ATGGAGGTTCCAGAGATGGAAGGCAAGACTGAAAGTCATATGATATCGGCGGTGGCATTCGTTGAAGGAGGGATTCAAGAATCATGTGATGATGCTTGCAGCATATGCCTTGAAGATTTTTGTGAAAGTGATCCTTCGACGGTCACTACTTGCAAGCATGAGTTTCACTTGCAGTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCGATGTGTTGGCAACCTATTAAACTGAAGGATCCTACCGGTCAAGAATTGTTCGAAGCAGTAGAGCATGAACGGAGCTTGAGGGATATTCCATCAAGAAATGCTGCTATTTTTCATCACCCTGCCCTTGGTGATTTCGACTTCCAGCAGTTACGCATCGGCGACTCTGATTTCGAAGAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGGGAAGAGCACAACACCGTGGTAGGAGGGAAGGGCATCGAACAAGATCATCTGCTAACCGTCATCCACAGTTCTTAGTATTCTCAAGTCAGCCTAGCGCACCTTCAGGCCCCGATTCAAGTCCTGGAGGGGGAAATGAATCAGCTTCAATTCCTATAGGAAGTTCGTCTACCATAATGACATCTGATGGAGATGAACCAGCACAGCAGATACCACATCTTCAAACTCAAAGCTCTTCCCCGGCTCGTGGATCTACTGTCATGGCAACAAACTACTCTAATGATAGAGGCTTTGGTGGTCATTCTTCACCAGTAAACCAAGATAGAGCGGGACCATCAGATTTCCAGTCATTTTCTGATTCTCTACGATCAAAATTTAATGCGGTGTCCATGAGATACAAAGAGTCAATTTCAAAAGGCGCGAAGGGATGGAAGGAGAGGCTGTTCTCTCGTAATTCTTCCATGTCAGAAGATGGACCAGAAGCTAGGAGAGAGGCAAATGTTGGCATTGCCAGTGTATCCCGATTGATGGAATCCCTTGAAACAAGAGAAAATAATAGAGTTGTGGGTACTTCTATGTCAAATCATTTGGAGGGTCGCTCTATCAGAGCCGAGGCGAGCAACCAGAACAATGTTGAAGGCAGTGGAGAGAACTCTTCACATGATAAGAATACTACAGCTGCGTGTTCTGCTGGCTCACATTCAAGTTGA 1134 0.4577 MEVPEMEGKTESHMISAVAFVEGGIQESCDDACSICLEDFCESDPSTVTTCKHEFHLQCILEWCQRSSQCPMCWQPIKLKDPTGQELFEAVEHERSLRDIPSRNAAIFHHPALGDFDFQQLRIGDSDFEERIIQHLAAAAAMGRAQHRGRREGHRTRSSANRHPQFLVFSSQPSAPSGPDSSPGGGNESASIPIGSSSTIMTSDGDEPAQQIPHLQTQSSSPARGSTVMATNYSNDRGFGGHSSPVNQDRAGPSDFQSFSDSLRSKFNAVSMRYKESISKGAKGWKERLFSRNSSMSEDGPEARREANVGIASVSRLMESLETRENNRVVGTSMSNHLEGRSIRAEASNQNNVEGSGENSSHDKNTTAACSAGSHSS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0351 377 MobiDBLite consensus disorder prediction 143 259 - -
Lan9g0351 377 SMART ring_2 33 73 IPR001841 -
Lan9g0351 377 MobiDBLite consensus disorder prediction 322 377 - -
Lan9g0351 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 82 IPR013083 -
Lan9g0351 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 7 376 - -
Lan9g0351 377 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 7 376 - -
Lan9g0351 377 CDD RING-H2_PA-TM-RING 33 73 - -
Lan9g0351 377 Pfam Ring finger domain 32 73 IPR001841 -
Lan9g0351 377 MobiDBLite consensus disorder prediction 325 377 - -
Lan9g0351 377 MobiDBLite consensus disorder prediction 160 259 - -
Lan9g0351 377 SUPERFAMILY RING/U-box 26 80 - -
Lan9g0351 377 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0351 Lan-Chr9 5329632 5334333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0351 30 81 C3H Transcription Factor Family AT4G00335 46.154 8.01e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0351 K19043 - gmx:100800419 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0351 9 5329632 5334333 Lan5g1062 5 23925072 23930652 LSH
Lan9g0351 9 5329632 5334333 Lan19g0337 19 4097278 4101622 LSH
Lan9g0351 9 5329632 5334333 Lan9g0351 9 5329632 5334333 PCT
Lan5g1062 5 23925072 23930652 Lan9g0351 9 5329632 5334333 PCT
Lan19g0337 19 4097278 4101622 Lan9g0351 9 5329632 5334333 PCT
Lan9g0351 9 5329632 5334333 Lan5g1062 5 23925072 23930652 PCT
Lan9g0351 9 5329632 5334333 Lan19g0337 19 4097278 4101622 PCT