Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0340 ATGCATGCTGGTCATGGTTTACGTTCTCGAACCAGAGACTCATTCTCTCGAGCCTTCAGGAAGAAAGGAACCATAGCCCTAGCCACCTATCTCCGAACCTATCACATCGGTGACTACGTCGACATCATCATCAATGGTGCAGTTCACAAAGGCATGCCTCACAAATTCTACCATGGCCGCACCGGTCGAGTTTGGAACGTAACAAACCACGCCATTGGCGTCGAGGTGAATAAACAAGTTAGTAACAAAATCATTAGGAAGAGAATTCATGTGAGAATTGAACATGTTAAGCCTTCAAGGTGCAACGAAGAGTTTCGTTTGAGGAAGAAGAATAATGATTTATTGAAAGGTGAGGCTAAGGTTAAAGGTGTTGTTATTAGTACGAAGAGAAAGCCTGAAGGGCCTAAACCAGGGTTTAAGGTTGAAGGTGCTATTTTGGAGATAGTTATTCGCCATACAATCATTGTAGCATATCTTGAGCTACTGAGTTGTGTGCTTTAA 501 0.4291 MHAGHGLRSRTRDSFSRAFRKKGTIALATYLRTYHIGDYVDIIINGAVHKGMPHKFYHGRTGRVWNVTNHAIGVEVNKQVSNKIIRKRIHVRIEHVKPSRCNEEFRLRKKNNDLLKGEAKVKGVVISTKRKPEGPKPGFKVEGAILEIVIRHTIIVAYLELLSCVL* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0340 166 PANTHER 60S RIBOSOMAL PROTEIN L21 1 150 IPR001147 GO:0003735|GO:0005840|GO:0006412
Lan9g0340 166 SUPERFAMILY Translation proteins SH3-like domain 4 99 IPR008991 -
Lan9g0340 166 Gene3D - 99 153 - -
Lan9g0340 166 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Lan9g0340 166 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Lan9g0340 166 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Lan9g0340 166 PANTHER 60S RIBOSOMAL PROTEIN L21-A-RELATED 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0340 Lan-Chr9 5226607 5227107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0340 1 149 Cytoplasmic Ribosomal Protein Gene Family AT1G57860 71.812 2.65e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0340 K02889 - gmx:100500046 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0340 9 5226607 5227107 Lan5g1035 5 23613058 23618695 LSH