Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0338 ATGGAACAACCTACACAAGTTTTACGTGGATCCAATAAAAACGACGTCGTTGCACTCGAGTCAATTCAGTTCAACGAAGAAATCCAAGGAATCATGGCGCCGGAAAACGCTAGATCCTTCACCGCGCTTCTTGAGCTTCGTTCGGCGCAGCCTGTTGAGTTTTTCCACTCGCCGGAATCCTCCGTCGCCGCCGCTTCTGCTCGGAAACCGCCTCTCGCGAACACGAAACCGTATAATTTGACCTTTCCTTCAAACTCCGGGTTGAGCGAACGCGCCGCGAGGTTCTCAGTGTTTTCCGGGGAGAATTCATCGTCGCCGGAGGAGGCGTGTTTGGTAGTTCCGGTTACTTCCGGTGATAGAGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCGTGCTCCACGCAAGGTTGTGTTTCTGATCCTGATGTTCAGGACAAGAATCAGAGGAATACGAAGAGGAAGGAGCGAGAGAAAAAGTTTAAACCTTCGTCAAAGAAGAGTAAGAGCGTCGCCGATGAGAACTCCGGTGACGGCGAGAAGCTCCCGTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAAATCAATGCTAGGATGAAGCTTTTACAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCATTAGTTTTGGATGAAATAATCAACCATGTGCAAAATCTACAACGTCAAGTGGAGTTCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGACTACAGATGGTGCATCTCTAGTGGGCAGTAACTTACCTAGCATGCTTACACCTCTAATGTGGCCAGAAATCCCACAAATTGGTAACAGACAGCATTATCAACAGCAATGGCAATATGATGCATTCCACCAACCACTCTGGGGAAGGGAAGAAGTGAACCATAATTTCATGACTCCAGAGAACTCACTTTTGACGTATGACTCGTCGGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1062 0.4783 MEQPTQVLRGSNKNDVVALESIQFNEEIQGIMAPENARSFTALLELRSAQPVEFFHSPESSVAAASARKPPLANTKPYNLTFPSNSGLSERAARFSVFSGENSSSPEEACLVVPVTSGDRVKNEPQETDSNPCSTQGCVSDPDVQDKNQRNTKRKEREKKFKPSSKKSKSVADENSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQNLQRQVEFLSMKLAAVNPRIDFSLDSLLTTDGASLVGSNLPSMLTPLMWPEIPQIGNRQHYQQQWQYDAFHQPLWGREEVNHNFMTPENSLLTYDSSANSASLHSNQLKMEL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0338 353 Gene3D - 190 262 IPR036638 GO:0046983
Lan9g0338 353 MobiDBLite consensus disorder prediction 120 185 - -
Lan9g0338 353 MobiDBLite consensus disorder prediction 127 145 - -
Lan9g0338 353 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 18 353 - -
Lan9g0338 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 262 IPR036638 GO:0046983
Lan9g0338 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 243 IPR011598 GO:0046983
Lan9g0338 353 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 18 353 IPR024097 GO:0006355
Lan9g0338 353 MobiDBLite consensus disorder prediction 163 185 - -
Lan9g0338 353 Coils Coil 233 253 - -
Lan9g0338 353 Pfam Helix-loop-helix DNA-binding domain 197 244 IPR011598 GO:0046983
Lan9g0338 353 SMART finulus 199 249 IPR011598 GO:0046983
Lan9g0338 353 CDD bHLH_AtBPE_like 183 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0338 Lan-Chr9 5203530 5209672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0338 17 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 49.598 1.00e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan9g0338 HLH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0338 - - lang:109334778 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0338 9 5203530 5209672 Lan5g1031 5 23577307 23583009 LSH
Lan9g0338 9 5203530 5209672 Lan19g0303 19 3362756 3368976 LSH