Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0333 ATGGCTGATCCTTACTCTAATTTCCTCTCCTCATCTTCTTCTTCATCTTTCTTCCAATTCAACCATTTCCAGTCTTCTCAAAAACCTTCTCAACATCAACATCAACATCACCATCATAATCCTTATCTCTATAACTTCATCAACACAACACAAAATGATACCACTTTTTCCCACTTTCATCACTATCACAACCTTCAAACTCAAACTACTACTAACCCTCCTTCACCTCCTCTTAGAGAAGAACTTCCACTTTTGACTCTAAGCCCAGCAAAGCAAAAAGAGAATAATAATAATATTCATGATGAAGAGCAAGATCAAGAAGAACTTCAACATCTATCTTGCACTGCCATGGATGTGGAAGAGAGGATCTATCTTTACAAAAAGGAAGAACAAAAAGAACAAGATGAGAACACTGTTACTGTTGCACTACACATAGGTTTACCAAACCCTAGTGCTGCTGAGATAGCATCTATGCTTTCATCAAATAATAATTCTTCTTCTGAGATCACTGATAAAGATCAACATGGTGGTGATGGTAGTGAGGGTTCTTCAGGATTCATGCTCAACAATAGGCTCAACAAGGGACAGTACTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCAGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGGCCTGAATCTCTAAGGGGTACCCAACCAACAGGAATGTTAAGGCTTCCATGCTATTGTTGTGCACCAGGGTGCAGAAACAACATTGATCATCCAAGAGCAAAACCACTCAAAGATTTTAGAACACTCCAAACACATTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTTGCAAGGCTTTTGCTGTGAGAGGAGATTGGAGAACACATGAAAAAAATTGTGGGAAACTTTGGTATTGTATTTGTGGCTCAGATTTTAAGCATAAGAGGTCCCTTAAGGATCATATAAAAGCTTTTGGGAGCGGCCATGCAGCTTATGGAATTGATGGATTTGAAGAAGAAGAAGATGAGCCAGCTTCTGAAGTAGAACAAGATAATGATGAGTCTACCCAGTAA 1128 0.3954 MADPYSNFLSSSSSSSFFQFNHFQSSQKPSQHQHQHHHHNPYLYNFINTTQNDTTFSHFHHYHNLQTQTTTNPPSPPLREELPLLTLSPAKQKENNNNIHDEEQDQEELQHLSCTAMDVEERIYLYKKEEQKEQDENTVTVALHIGLPNPSAAEIASMLSSNNNSSSEITDKDQHGGDGSEGSSGFMLNNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEDEPASEVEQDNDESTQ* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0333 375 MobiDBLite consensus disorder prediction 161 186 - -
Lan9g0333 375 Gene3D Classic Zinc Finger 273 349 - -
Lan9g0333 375 SUPERFAMILY beta-beta-alpha zinc fingers 278 316 IPR036236 -
Lan9g0333 375 Coils Coil 90 110 - -
Lan9g0333 375 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Lan9g0333 375 Gene3D Classic Zinc Finger 211 234 - -
Lan9g0333 375 PANTHER ZINC FINGER PROTEIN WIP2 22 372 IPR043584 GO:0003700|GO:0010468
Lan9g0333 375 Coils Coil 363 375 - -
Lan9g0333 375 MobiDBLite consensus disorder prediction 354 375 - -
Lan9g0333 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 239 IPR013087 -
Lan9g0333 375 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 22 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0333 Lan-Chr9 5135842 5138968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0333 1 375 C2H2 Transcription Factor Family AT3G57670 60.697 6.49e-144 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan9g0333 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0333 - - gmx:100802907 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0333 9 5135842 5138968 Lan5g1023 5 23507312 23510363 LSH
Lan9g0333 9 5135842 5138968 Lan19g0296 19 3240528 3243385 LSH