Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0329 ATGGAGAAAAATGGTCTCTTACAAGCTGAATCTCATGCCAATGAAAACATGTCCCATGAGTTGGATCCGTTAAAGCAGCTAGCAACATCTCCAACGCTCTCTCCTAATTTGATAAGCTCATCCGAACCTAATAGCAACAAGATGAATCACTTGACTATTGATACCGATGATTCTTTTGCAAGCTTGCTTGAGCTTGCGGCCAATAACGATGTTGAAGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCTGTAGATGAGGTTGGGGTATGGTATAGTCGTCGGAAGGGATCAAAACAAATGGTCAATGAGCAAAGAACTCCTTTGATGATCGCTGCTACTTATGGTAGCATTGAAATTATGAAAATGATTCTTTCACTATCTGATGCCGACATCAACCGCTCTTGTGGACTCGACAAGAGCACTGCCCTTCATTGTGCAGCATCTGGTGGGGCTGAAAATGCTGTTGATGCTATGAAACTACTACTGGCAGCAGGGGCTGATCCGAATTCGGTGGATGCCAATGGGCATCGTCCAGCGGATGTTATTGTTTTCCCTCCCAAGCTTCAATATGTCAAAAACAGTCTTGAACAACTTCTTCAAACTGATGATTCTATTGCTGGCTGCAATCTTAGGGTGATTACAACCTCCTCATTCAATTCATATTCTCCACCTTTATCAAACTCACCGGAGAATGGGTCTCCTTCTGCATCAGATTTCCAATTGAAGTTGAAGTCAAATGATGTGCCTATTTCGTCTGCATCTGAAAAGAAAGAATATCCTATTGATCCTTCCCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGGCCTTGTTCTCGTGCTTATTCGCATGATTGGACTGAATGCCCTTTTGTCCATCCTGGGGAGAATGCTCGTAGAAGGGATCCAAGAAAGTACCATTACAGCTGTGTACCTTGTCCCGATTTCCGCAAGGGTGCTTGCCGTCGTGGAGACATGTGTGAATATGCTCACGGGGTTTTTGAGTGTTGGCTGCATCCAGCACAATATCGAACTCGCCTCTGCAAGGATGGGATAAATTGTTCCAGAAGAGTTTGTTTCTTTGCGCACACTGCTGAAGAGCTTCGACCGTTATATATTTCAACTGGTTCTGCTGTTCCCTCACCTCGCTCAAGTACATCATCGGCCATGGATTTCGCTGCTGCAATGAGCATGTTGCCAGGCTCTCCTTCCTCAATGTCAGTCATGTCGCCTTCACCATTCACTCCACCTATGTCACCTTCTGCTAATGGCATGCACTCTTCTGTTCCTTGGCCACAGCCGAATGTCCCAGCCTTACATCTTCCGGGAAGTAATCTTCAGTCTAGTCGTTTGAGATCTTCACTCCATGCTAGAGATATTCCTATGGATGGTTTTGACTCATTCTCTGATTATGATCAGCAACAACAGCTCCTAAATGAGTTATCTTGCCTCTCTCCACAGCATCCAATGAATTCTAATAATCTGAACCGCTCAGGTCGAATGAAACCCCTGACTCCTTCAAATCTTGATGACCTCTTCTCTGCCGAGAGTTCTTCTCCTCGATTTACTGATGGTTCACTGGCTTCAACTGTTTTTTCTCCAACACACAAATCAGCTGTCTTTAATCAGTTTCAGCAACATCAAAGCATGTTGTCGCCTGTGAATTCTAATTTTTCTCCGAAAAATGTTGAGCATCCTTTGTTGCACAGCGCCTCTTTCGGGGTGCAGTCACCAGGAAGAATGTCCCCACGAAACATGGAACCTATTTCTCCGATGAACTCTAGAATGTCTATGCTAGCTCAGCACGAGAAACAGCAACAATTTCGTAGCCTTAGCTCCCGGGATCTCGGCTCCAACTCTGCTACTGCTGCCTCAGCCAACTCTTGGTCAAGGTGGGGGTCTCCGAATGGTAGGGCAGCTGGTGCAGAGGAATTCAATAAGCATCACCGCAGATCATCTTCTTTCGAGCTCGGGAACAATGGCGAGGAGCCGGATTTATCATGGGTTCAGTCACTTGTCAAAGAATCTCCAACCGAGATTAAAGAGAAGTGGACCACCAATGTCCCAACTGTTGCAGCAGCTGGATCCTCGAGCGAAGGGTCAAACATAAGCGCATCACAAATGAACTCTGTTGATCATGCTGTATTGGGAGCATGGCTTGAACAGATGCAGCTCGATCATCTCGTGGCTCAGCAAAACTGA 2235 0.4546 MEKNGLLQAESHANENMSHELDPLKQLATSPTLSPNLISSSEPNSNKMNHLTIDTDDSFASLLELAANNDVEGFKRLIECDPSSVDEVGVWYSRRKGSKQMVNEQRTPLMIAATYGSIEIMKMILSLSDADINRSCGLDKSTALHCAASGGAENAVDAMKLLLAAGADPNSVDANGHRPADVIVFPPKLQYVKNSLEQLLQTDDSIAGCNLRVITTSSFNSYSPPLSNSPENGSPSASDFQLKLKSNDVPISSASEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYISTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMHSSVPWPQPNVPALHLPGSNLQSSRLRSSLHARDIPMDGFDSFSDYDQQQQLLNELSCLSPQHPMNSNNLNRSGRMKPLTPSNLDDLFSAESSSPRFTDGSLASTVFSPTHKSAVFNQFQQHQSMLSPVNSNFSPKNVEHPLLHSASFGVQSPGRMSPRNMEPISPMNSRMSMLAQHEKQQQFRSLSSRDLGSNSATAASANSWSRWGSPNGRAAGAEEFNKHHRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKWTTNVPTVAAAGSSSEGSNISASQMNSVDHAVLGAWLEQMQLDHLVAQQN* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0329 744 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 343 IPR000571 GO:0046872
Lan9g0329 744 MobiDBLite consensus disorder prediction 610 677 - -
Lan9g0329 744 MobiDBLite consensus disorder prediction 610 645 - -
Lan9g0329 744 MobiDBLite consensus disorder prediction 653 667 - -
Lan9g0329 744 Gene3D - 319 381 - -
Lan9g0329 744 SMART c3hfinal6 318 344 IPR000571 GO:0046872
Lan9g0329 744 SMART c3hfinal6 353 376 IPR000571 GO:0046872
Lan9g0329 744 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 48 741 - -
Lan9g0329 744 ProSiteProfiles Zinc finger C3H1-type profile. 323 345 IPR000571 GO:0046872
Lan9g0329 744 PANTHER UNKEMPT FAMILY MEMBER 48 741 IPR045234 -
Lan9g0329 744 ProSiteProfiles Ankyrin repeat region circular profile. 139 173 - -
Lan9g0329 744 Gene3D - 25 193 IPR036770 -
Lan9g0329 744 ProSiteProfiles Ankyrin repeat profile. 139 174 IPR002110 GO:0005515
Lan9g0329 744 SUPERFAMILY Ankyrin repeat 58 185 IPR036770 -
Lan9g0329 744 Pfam Ankyrin repeats (3 copies) 65 173 IPR002110 GO:0005515
Lan9g0329 744 MobiDBLite consensus disorder prediction 583 602 - -
Lan9g0329 744 SMART ANK_2a 139 171 IPR002110 GO:0005515
Lan9g0329 744 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lan9g0329 744 SMART ANK_2a 104 134 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0329 Lan-Chr9 5102671 5106306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0329 58 737 C2H2 Transcription Factor Family AT5G12850 52.143 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan9g0329 Ank_2 1.4e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0329 - - ccaj:109796653 1122.84