Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0303 ATGGATCACACAACTCTATTCAATCTCGAGTCTTTGATGAAGTTTCAACTTCCAGAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTAGGACAATTGCGGATCAAAGTAATGGGGATATGCATGGAAGGGAGGTGATTTTGTTAAAGAAGAGGAGGTGGTCTCAAAATAGTGACGACGGGACACACATGACCGAGGAGAGATATCGATCAATGCTTGGGGAGCATGTTCTGCAATACAGGAGGAGGGTTAAAGATACCTCTTCTAGTCCTGCCCAAAATCAGATTGCTGTTCCACTTCTTAAAAGTAGTGCTGGCTTAAAAGCTCGCAAGTCTGGGAGTGAGCGCAGAGAAGGATTACACGCTACAGAGACTTCATCCGAATGGATGAATGATTCCAATTCTAAGAAAGTGGGAAATCACCGTGATGCTGATTTCGTTCAGCGATATCACACTGATAGGATTAACTATGAACCTGCTACTTTAGATATTGGGGATGGAATCACGTACAAGATTCCTCCAATTTATGATAAGCTGGCAGCAATGCTGAACCTTCCAACCTTCACAGATATCCACCTTGATGACTCTTACTTAAAGAGTACCTTGGATTTGGGCTCCTTGGCCAAAATGATGTCACCTGGTAAAAGGTCTGGGAATAAAAACCGAGCAGGCATGGGGGAAACCATATGCCAATATGAATCACTTCAGGCCCGATTGAAGGTCATATCAACTTCTAATTCAGCTCATAAATTCAGTCTGAAAGTCTCTGATGTTGATTTGGATTCCTGCATTCCGGAGGGGGCAGCTGGAAGTATAAAGCGATCTATTTTGTCCGAGGGTGGTATATTGCAGGTTTATTATGTCAAGGTTTTGGAGAAAGGGGACACCTATGAGATTATTGAACGAAGCCTACCTAAGAAGCAAAAGATAAAGAAAGACCCGGCTTTGATCGAGAAGGAGGAAATGGAAAGAATTGGAAAGGTTTGGGTGAATATTGTAAGAAGAGACATACCTAAGCAACATAGGAACTTTACTATGTTTCATCGAAAACAACTCATTGATGCCAAGAGGGTCTCAGAGATCTGTCAAAGAGAGGTTAAAATAAAAATTAATAGATCACTTAAGTGGCCGAGGACTGCTGGTATGCGCACCCGGAAACTTGCTAGAGACATGTTGCTGTTCTGGAAACGGATAGATAAGGAGATGGCGGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAAGAGCTTCGTGAAGCAAAGAGGCAGCAGCAACGACTTAATTTTCTCATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCTTCCGAAGGCTTACCCATGGCAGATGAAAACACAACTGATCAAGATGCACTGGTTGGTTCTTCAGATGCTGGACCTAACGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTCAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAGAAGTTTGACAAATGCTTTTGACACTGAATGCTTGAGGCTGCGCCAGGTTGATGAAACTGATGCGCTTCAACCAGAAGTTGCTGGAGCAAGTAATATTGATTTGCAAACCCCCTCAACCATGCCAGTGGCTTCCACAGTTCAGACACCGGAATTATTTCAAGGTTGTCTCAAAGAGTATCAGCTCAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGGCTCGGAAAGACCATTCAGGCTATGGTTTTTTTAGCTCATTTAGCTGAGGAGAAGAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCGGTATTAAACAATTGGAACGAGGAACTTGAGCGCTTCTGCCCTGGACTGAGAAGACTTCCTTACTGGGGTGGGATTTCAGAGAGAACAGTCCTTAGGAAAAGTATTAACCCTAAGGATCTTTACCGTAGGGAAGCTAAATTCCACATTCTCATTACAAGCTACCAGCTATTAGTAACTGATGAGAAGTATTTTCGTCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGCGCAAACAGTATACGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTACTGTTGACTGGTACACCTGTACAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAGAGGAATCGAGAACCATGCAGAACACGGGGGTACTTTGAATGAGCACCAACTCAATAGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGACGTGTTAAAAAAGATGTAGTTTCTGAGCTGACTACAAAAACTGAGGTTACAGTGCATTGCAAGTTAAGTTCTCGGCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATATCTCTTGCGGAGCTGTTTGATAGCAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATCGTTATTCAACTAAGGAAGGTTTGCAATCATCCAGAATTATTTGAAAGAAGTGAGGGGACAACATACCTTTACTTTGGAAAGATTCCAAATTCCCTTCCACCTCCTCCGTTTGGGGAGTCGGAGGATGTATATTATTCTGGTGGTCACAACCCCATAACATATCAGATACCGAAACTTGTCTATCAAGAAATTTTGCGTAGTTCTGAAGCTCTCAGTTCAGCTGTTGGTTGTGGTGTCAGCAAAGAATCTTTTCAGAAACATTTTAATATTTTTAGACCAGAAACTGTATATCGATCTATTTTCTCATATGATATGTATGTTAAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGGTGACATTTCTGGCTACCGGTTCTTTTATGGAGCGACTATTATTTTCTATGATAAGGTGGGAACAAAATCTTCTCGACGAAGTTGTAGAATTTCTTACTGAGACCATAGACGATGATCCAGAATGTAGTTACCTCGAGCAAGGAAAAGTGAGAGCTATCACGCGTATGTTATTAGTGCCACCGAGATCGGAGACTAAGTTGCTACAAAGAAAATTTCCAATTGGGCCCCGCCATTCTCCTTTTGAGGCCTTGGTTGTCTCACATCGGGACAGGCTTTTATCAAATGCAAGGCTTCTTCACTCAGCTTACACCTATATCCCACGGAGCAGAGCTCCCCCAATTGGTGCTCACTGCTCTGATAGAAACTTCTACTATAAAATGATTGAAGAGTTACATGATCCATGGCTTAAGAGATTATTTGTGGGATTTGCACGTACATCTGACTGTAATGGGCCTAGAAAGCCAGATAGTCCTCGTCATAATTTAATTGAAGAGATAGATTCTGTACTACCTCTTTCTCAGCCCGCTCTTCAGTTGACGCACAGTATATTTGGGTCCTCTCCACCTATGCGGAATTTTGACCCAGCAAAGTTGCTGACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGGGCAGGAAATCACCGGGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAATTACAGAAAATACAAGTATTTTAGACTTGATGGATCATCTACTATTCAGGATCGCAGAGACATGGTTAGAGACTTCCAGCATAGGTCCGATATCTTTGTGTTCTTATTGAGTACGAGAGCGGGTGGATTGGGTATCAACTTGACCGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGGTTGGGTCAAACGAAAGATGTTACTGTTTACCGACTTATTTGTAAAGAAACAGTCGAAGAGAAGATTCTTCTTAGAGCGAGCCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTCGGTGGCGATCTCTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGCAGAAATTAAAGCAAATCCCTCTCCAGGCAAAGGATAGGCAAAAGAAAAAACAACCTATGAAGGGTATTCGGGTAAATGAAGATGGTGATGCTTCTCTAGAAGATCTGACTAATTCTGTAGCCCAGACTACACCAGATCATGATCTTTCCATGGAACCAGAAGGGTCCAAATCCGGTAATAATAAAAAGAGAAAGTCTGCCACAGATAAGCAAACTTCAAGGTCAAAGAATTCTCAAAAGATGAATGAACACGGTATGAACACGCCTATGGATGACGAATTCGATGATACCCACCTAACTACTGATCCAGTAAGCCAGAAACCCAAGAGACCAAAGAGAGCAAAGAAAAATGTGAATGAAAAGTTTGAAGAGGCAGAGCAGATCCAATTTCCACCACCGCCGCGTGATTTCAGTGCCGGTGTTTCTAAATCAGAATCTGGCTAA 4530 0.4216 MDHTTLFNLESLMKFQLPEQDDDFDYYGNSSQDESRDSQGRTIADQSNGDMHGREVILLKKRRWSQNSDDGTHMTEERYRSMLGEHVLQYRRRVKDTSSSPAQNQIAVPLLKSSAGLKARKSGSERREGLHATETSSEWMNDSNSKKVGNHRDADFVQRYHTDRINYEPATLDIGDGITYKIPPIYDKLAAMLNLPTFTDIHLDDSYLKSTLDLGSLAKMMSPGKRSGNKNRAGMGETICQYESLQARLKVISTSNSAHKFSLKVSDVDLDSCIPEGAAGSIKRSILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKIKKDPALIEKEEMERIGKVWVNIVRRDIPKQHRNFTMFHRKQLIDAKRVSEICQREVKIKINRSLKWPRTAGMRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEGLPMADENTTDQDALVGSSDAGPNEEEDPEEAELKKEAFKAAQEAVSKQRSLTNAFDTECLRLRQVDETDALQPEVAGASNIDLQTPSTMPVASTVQTPELFQGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLRRLPYWGGISERTVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSRGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGTTYLYFGKIPNSLPPPPFGESEDVYYSGGHNPITYQIPKLVYQEILRSSEALSSAVGCGVSKESFQKHFNIFRPETVYRSIFSYDMYVKSGNFGFTHLMDLSPQEVTFLATGSFMERLLFSMIRWEQNLLDEVVEFLTETIDDDPECSYLEQGKVRAITRMLLVPPRSETKLLQRKFPIGPRHSPFEALVVSHRDRLLSNARLLHSAYTYIPRSRAPPIGAHCSDRNFYYKMIEELHDPWLKRLFVGFARTSDCNGPRKPDSPRHNLIEEIDSVLPLSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKQIPLQAKDRQKKKQPMKGIRVNEDGDASLEDLTNSVAQTTPDHDLSMEPEGSKSGNNKKRKSATDKQTSRSKNSQKMNEHGMNTPMDDEFDDTHLTTDPVSQKPKRPKRAKKNVNEKFEEAEQIQFPPPPRDFSAGVSKSESG* 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0303 1509 Coils Coil 410 449 - -
Lan9g0303 1509 MobiDBLite consensus disorder prediction 117 146 - -
Lan9g0303 1509 PANTHER HELICASE SRCAP-RELATED 7 1483 - -
Lan9g0303 1509 MobiDBLite consensus disorder prediction 1412 1433 - -
Lan9g0303 1509 Pfam Helicase conserved C-terminal domain 1192 1301 IPR001650 -
Lan9g0303 1509 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 585 756 IPR014001 -
Lan9g0303 1509 MobiDBLite consensus disorder prediction 119 133 - -
Lan9g0303 1509 MobiDBLite consensus disorder prediction 1394 1408 - -
Lan9g0303 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 803 1376 IPR027417 -
Lan9g0303 1509 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1192 1342 IPR001650 -
Lan9g0303 1509 MobiDBLite consensus disorder prediction 1371 1393 - -
Lan9g0303 1509 CDD SF2_C_SNF 1180 1312 - -
Lan9g0303 1509 MobiDBLite consensus disorder prediction 31 46 - -
Lan9g0303 1509 MobiDBLite consensus disorder prediction 1448 1470 - -
Lan9g0303 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 801 IPR027417 -
Lan9g0303 1509 SMART helicmild6 1218 1301 IPR001650 -
Lan9g0303 1509 Pfam DNA-binding domain 333 462 IPR020838 GO:0003677
Lan9g0303 1509 Pfam SNF2-related domain 588 875 IPR000330 GO:0005524|GO:0140658
Lan9g0303 1509 MobiDBLite consensus disorder prediction 466 502 - -
Lan9g0303 1509 MobiDBLite consensus disorder prediction 23 51 - -
Lan9g0303 1509 PANTHER CHROMATIN-REMODELING ATPASE INO80 7 1483 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Lan9g0303 1509 Gene3D - 546 826 IPR038718 -
Lan9g0303 1509 MobiDBLite consensus disorder prediction 1371 1509 - -
Lan9g0303 1509 Gene3D - 1160 1411 IPR027417 -
Lan9g0303 1509 SMART ultradead3 569 764 IPR014001 -
Lan9g0303 1509 ProSiteProfiles DBINO domain profile. 338 463 IPR020838 GO:0003677
Lan9g0303 1509 MobiDBLite consensus disorder prediction 466 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0303 Lan-Chr9 4079941 4091319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0303 594 883 RAD5 or RAD16-like Gene Family AT5G43530 28.274 8.26e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan9g0303 SNF2_N 4e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0303 K11665 - gmx:100780615 2500.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0303 9 4079941 4091319 Lan5g0991 5 23172651 23184091 LSH