Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0246 ATGTTTTTAACGAAGGTTTTTCGCTCTCGCAAATTATCCAGATCCTTAAATTCAACCACCCCTTTTGACCCATCACCCGCCGGAGACAGAAACTCCGGCGAGGAACCGCCGCAATGTAACGACTGGTCCACTTTGCTGCCGGAGCTTCTCCGGGAGATTATAAGGCGCGTGGATATCATCGAGGAGCATTGGCCACACCGCCAAAACGTCGTCGCTTGTGCCGGTGTTTGCAAGCGGTGGAGAAACATCACGCGCGAGATTGTGCGTTCCCCTTCTCATAAAGGCACAATTACATTCCCCTCTTGCCTTAAACAGGCAGGACCACATGACCTTCCCCAGCAATGCTTTATAAAGCGGAACAAGAAAACCTCAACGTTTTACCTCTATCTTTCCCTTACATCATCATTGACAGATAAAGGGAAGTTTCTGTTAGCGGGTAGAAGATATAGGCGTGGTACACACACTGAGTATATAATATCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCCTATGTTGGAAAGTTAAGATCAGATTTTCTCGGCACCAACTTCACAATTTATGACAGCCAGCCTCCCCACAGTGGAGCAAAGCCATCAAGTGGAAGGTCCAGCCGTCGTTTTGACAGCAAGCAGATAAGCCCCGAAGTTCCTGCAGGCAACTTCGAGGTGGGGCAGCTCTCCTACAAATTCAACCTCTTGAAATCAAGAGGGCCAAGGAGGATGGTCTGCACACTGAAGTGTCCCATCTCATCACCATCATCATCGTCCGGAGAAAGTTCAGATATCATATCTCCAGATGGCCATAAGATCCACAGTAGTAGAGAACACGGCCACTCAATCTTGAAGAACAAAGCTCCAAGGTGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTCCACGGTCGTGTGACCGTGGCATCGGTGAAGAACTTTCAGCTTGTAGCTACTGTGGACCAAAGCAAACCTGGAGGGAAAGGAGATGAGGAAACAGTTCTGCTTCAGTTTGGAAAAGTAGGGGATGATACTTTTACCATGGATTATAGAAAGCCCTTATCTGCTTTTCAGGCATTTGCAATTTGCTTGAGTAGCTTTGGCACTAAACTAGCATGTGAATAA 1122 0.4733 MFLTKVFRSRKLSRSLNSTTPFDPSPAGDRNSGEEPPQCNDWSTLLPELLREIIRRVDIIEEHWPHRQNVVACAGVCKRWRNITREIVRSPSHKGTITFPSCLKQAGPHDLPQQCFIKRNKKTSTFYLYLSLTSSLTDKGKFLLAGRRYRRGTHTEYIISLDADDLSQGSNAYVGKLRSDFLGTNFTIYDSQPPHSGAKPSSGRSSRRFDSKQISPEVPAGNFEVGQLSYKFNLLKSRGPRRMVCTLKCPISSPSSSSGESSDIISPDGHKIHSSREHGHSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSKPGGKGDEETVLLQFGKVGDDTFTMDYRKPLSAFQAFAICLSSFGTKLACE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0246 373 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 34 373 - -
Lan9g0246 373 ProSitePatterns Tub family signature 1. 301 314 IPR018066 -
Lan9g0246 373 SUPERFAMILY F-box domain 33 85 IPR036047 GO:0005515
Lan9g0246 373 MobiDBLite consensus disorder prediction 15 40 - -
Lan9g0246 373 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Lan9g0246 373 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Lan9g0246 373 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Lan9g0246 373 PRINTS Tubby superfamily signature 283 300 IPR000007 -
Lan9g0246 373 PRINTS Tubby superfamily signature 301 317 IPR000007 -
Lan9g0246 373 PRINTS Tubby superfamily signature 330 349 IPR000007 -
Lan9g0246 373 PRINTS Tubby superfamily signature 351 373 IPR000007 -
Lan9g0246 373 PANTHER TUBBY-RELATED 34 373 - -
Lan9g0246 373 ProSitePatterns Tub family signature 2. 358 373 IPR018066 -
Lan9g0246 373 Pfam Tub family 103 368 IPR000007 -
Lan9g0246 373 SUPERFAMILY Tubby C-terminal domain-like 91 373 IPR025659 -
Lan9g0246 373 MobiDBLite consensus disorder prediction 191 214 - -
Lan9g0246 373 Pfam F-box domain 42 89 IPR001810 GO:0005515
Lan9g0246 373 MobiDBLite consensus disorder prediction 191 209 - -
Lan9g0246 373 Gene3D - 36 92 - -
Lan9g0246 373 Gene3D Tubby Protein; Chain A 98 373 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0246 Lan-Chr9 3234162 3237853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0246 36 373 TUB Transcription Factor Family AT1G53320 74.640 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan9g0246 Tub 3.9e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0246 K19600 - gmx:100801919 565.074