Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0201 ATGCAGATCTTCGTGAAAACTTTGACCGGAAAGACCATCACTCTCGAAGTTGAGAGCAGCGACACAATTGACAACGTCAAAACCAAGATTCAGGACAAGGAAGGTATCCCTCCTGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGCACTCTTGCCGATTATAATATACAAAAGGAATCCACACTTCATTTGGTCTTGAGGCTTAGGGGAGGAACCATGATTAAAGTGAAGACTCTAACTGGAAAAGAAATTGAAATTGACATCGAGCCTACTGATACCATCGACCGCATCAAGGAACGAGTTGAAGAAAAAGAGGGAATTCCACCTGTGCAACAGAGGCTCATATATGCTGGTAAGCAACTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAAGGTGGTTCTGTGCTTCACTTAGTGCTTGCATTGAGGGGTGGTATTTATTAG 465 0.4344 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGIY* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0201 154 Gene3D - 78 154 - -
Lan9g0201 154 Gene3D - 1 77 - -
Lan9g0201 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Lan9g0201 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Lan9g0201 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Lan9g0201 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lan9g0201 154 PANTHER UBIQUITIN 1 153 - -
Lan9g0201 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lan9g0201 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Lan9g0201 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lan9g0201 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lan9g0201 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lan9g0201 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lan9g0201 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Lan9g0201 154 CDD Ubl_ubiquitin 1 76 - -
Lan9g0201 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Lan9g0201 154 PANTHER - 1 153 - -
Lan9g0201 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lan9g0201 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0201 Lan-Chr9 2444479 2447529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0201 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.684 1.27e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0201 K12158 - gmx:100800163 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0078 19 594536 606753 Lan9g0201 9 2444479 2447529 LSH