Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0185 ATGATGTCAGCAAGGTTTCTTGTTCTTGTTGGAGAGTCATTTCCCATGAGAAGGGCTTTGGTCTCTTCTAGGAATGCTTGGTTTCATAGCAGTGTTCATTGTAAGAATCAGGTTGAACCCCGAAATGGTTCCCTTTCGCTTTCAAGCATTGGTTTGAAAAGTGAAATTGAACCCAAAGACAAAATCCAATCAGATAAGGTTGTTAAGCCATTGGGTTCGTCTTCGGAATCCCTGAAGAAAAAAGGAAAACTCGGCCACATCAATGAGAAAAAAGTAGTTCAATTTAGTCTGAAACAACCAATAGAGTCTGCTCCCTTTGCTGCAAATTCGTTTTCAGAACTCGGTGTCCCGCAGGTATTGATTGAGAGGCTAGAAAATGTGGGGTTCAATGTTCCGACCGATGTTCAGTCTGCTGCGATTCCTACCATCCTGAAGAAACATGATGTGATAATTCAGTCATATACAGGTTCAGGGAAAACATTGGCTTATCTGCTTCCTATACTCTCAGCTATTGGCCCGCTAAGGAATAGAGATCCTGAAGGTAATGGTGGTGATGGTGGGAGGAACAGCGGAATAGAAGCGGTTGTTGTTGCTCCCTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGATACTAGGAATGGAAAACAGGAAAGTGGTTCAGCAGCTCGTGGGAGGTGCAAATCGTACTAGGCAGGAAGAAGCTCTTAAGAAAAATAAGCCCGCTATTGTTGTTGGTACACCTGGTAAGATAGCCGAGCTCAGTGCATCTGGGAAACTTCGCACTCACAGCTGTCGTTATTTGGTATTAGATGAAGTTGACGAACTCCTTTCGTTCAATTTCCGTGAGGATATGCACCGGATAATTGACCATGTAGGGAGGAGAGCAGGTGCAGGTGCAGACCCAAGTTCTAAAAGGATCGAGCGTCAATTAATTATGGTATCTGCAACTGTCCCATTTTCTGTTGTAAGGGCAGCAAGGAGCTGGGGTTGTGAACCACTTCTTGTCCAAGCTAAGAACGTTGTCCCACTTGAATCTATCCCTCCTCCTAAGCCTGTCATTCTGTCAGAGTCTTCATCCGGCCCAAGTTCTACACCATCTCAGGCATCAGTAGAGAGCCTACCTCCGGGATTGAAACACTATTACAGTGTAGCGAGGTTGCAGCACAAAGTTGATACCTTGAGAAAGTGTGTTCATGCATTGGATGCCAAGTATGTAATAGCTTTCATGAATCACACAAAGCAGCTAAAGGATGTGGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCTGCAGAGTTGCACGGGGATCTCGGGAAGCTTGCTAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAAGTGAGAGTTCTGGTGACAAACGAATTGTCAGCAAGGGGCCTGGATGTGCCAGAATGTGATCTTGTGGTTAATATTGGCTTGCCCACAGATTCAACCCACTATGCACACCGAGCGGGCCGAACTGGTCGTCTCGGTCGGAAAGGTACAGTGCTTACCATATGTGAAGAGTCAGAATTGTTTGTTGTGAAGAAAATGCAGAAGCAGCTTGGAATACCAATAGCATGCTGTGATTTTACTGATGGAAAGCTTCTTGTCACCAAAGAAGAGAAAACACTCAGCACTTCTGTATGA 1659 0.4527 MMSARFLVLVGESFPMRRALVSSRNAWFHSSVHCKNQVEPRNGSLSLSSIGLKSEIEPKDKIQSDKVVKPLGSSSESLKKKGKLGHINEKKVVQFSLKQPIESAPFAANSFSELGVPQVLIERLENVGFNVPTDVQSAAIPTILKKHDVIIQSYTGSGKTLAYLLPILSAIGPLRNRDPEGNGGDGGRNSGIEAVVVAPSRELGMQIVREFEKILGMENRKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGKIAELSASGKLRTHSCRYLVLDEVDELLSFNFREDMHRIIDHVGRRAGAGADPSSKRIERQLIMVSATVPFSVVRAARSWGCEPLLVQAKNVVPLESIPPPKPVILSESSSGPSSTPSQASVESLPPGLKHYYSVARLQHKVDTLRKCVHALDAKYVIAFMNHTKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVPECDLVVNIGLPTDSTHYAHRAGRTGRLGRKGTVLTICEESELFVVKKMQKQLGIPIACCDFTDGKLLVTKEEKTLSTSV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0185 552 MobiDBLite consensus disorder prediction 356 376 - -
Lan9g0185 552 CDD SF2_C_DEAD 383 510 - -
Lan9g0185 552 Pfam DEAD/DEAH box helicase 133 325 IPR011545 GO:0003676|GO:0005524
Lan9g0185 552 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 339 IPR014001 -
Lan9g0185 552 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 529 - -
Lan9g0185 552 CDD DEADc 120 340 - -
Lan9g0185 552 Gene3D - 74 341 IPR027417 -
Lan9g0185 552 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 529 - -
Lan9g0185 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 521 IPR027417 -
Lan9g0185 552 SMART helicmild6 420 501 IPR001650 -
Lan9g0185 552 Pfam Helicase conserved C-terminal domain 396 501 IPR001650 -
Lan9g0185 552 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 540 IPR001650 -
Lan9g0185 552 SMART ultradead3 128 357 IPR014001 -
Lan9g0185 552 MobiDBLite consensus disorder prediction 359 375 - -
Lan9g0185 552 Gene3D - 378 535 IPR027417 -
Lan9g0185 552 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0185 Lan-Chr9 2167761 2170106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0185 109 529 Eukaryotic Initiation Factors Gene Family AT3G19760 23.934 7.86e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0185 - - gmx:100812968 802.357