Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0174 ATGTCGACGGCGGAGGCAGAATTAATAACATACTGGTGCCACGAATGCGATATGAGCGTGGCTCTCACTCCCTCTCAATCTTCTTCACCACTCCTTTGTCCCCATTGCCTCACACAATCCCTCGAGCTCATGGATTCTCCTTTCCACCAAAACGACGCCGCATCACCACTCTCAATCTTCGATTCCCCTTTCCTCCATAGCCTCGTTTTCACCACTAACCCCAACGACGCCGTTTCAGGAAACGACGTCGTCGTCCAAGACCCGCTCGCTCTACTCTACCCAACAACGCTAATAGCCTCAAAACCACGCGCGTCAGAAACCGTACCTGTAATCGTTGTAACTGAATCCCTTCTCTTAAATCTTGACCCAAACGGCGTCGTTTTATGCGCTGTGTGTAAAGACGATATCGCCGTCAACGATAAAGCGATGATTCTTCCTTGTAACCACTTGTATCATTCCGATTGCATCACGCCGTGGCTTTTAAACCATGACTCATGCCCGCTGTGTCGGTTTCGGGTGGTGGACGGGGAAGAGAAAGGAGAAGAAGGTGGCGGCGGTGATGGTGACAGGACTAGGGAGATCAGGAGGCAGTTGACGGTGGCGATGGCGAGGCTTTTGGAGCTGATGGAGGAAGAGGAGGAGGAGGATTTGTATGGATTGAGAACTACTCTGAATCACATTGCTTCTAGGAATGGGATTCTTCACGAGGATTCTGGTGGTTCTGGTGTGAGTGAGTCTGTGATTGTTAGCATTGGTGGTGGTGGTGATGAACAATTACCGTGA 783 0.5057 MSTAEAELITYWCHECDMSVALTPSQSSSPLLCPHCLTQSLELMDSPFHQNDAASPLSIFDSPFLHSLVFTTNPNDAVSGNDVVVQDPLALLYPTTLIASKPRASETVPVIVVTESLLLNLDPNGVVLCAVCKDDIAVNDKAMILPCNHLYHSDCITPWLLNHDSCPLCRFRVVDGEEKGEEGGGGDGDRTREIRRQLTVAMARLLELMEEEEEEDLYGLRTTLNHIASRNGILHEDSGGSGVSESVIVSIGGGGDEQLP* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0174 260 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 99 182 - -
Lan9g0174 260 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 48 - -
Lan9g0174 260 SMART ring_2 129 169 IPR001841 -
Lan9g0174 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 184 IPR013083 -
Lan9g0174 260 ProSiteProfiles Zinc finger RING-type profile. 129 170 IPR001841 -
Lan9g0174 260 SUPERFAMILY RING/U-box 128 174 - -
Lan9g0174 260 Coils Coil 195 215 - -
Lan9g0174 260 Pfam zinc-ribbon 10 43 IPR039525 GO:0061630
Lan9g0174 260 MobiDBLite consensus disorder prediction 238 260 - -
Lan9g0174 260 Pfam Ring finger domain 129 170 IPR001841 -
Lan9g0174 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 48 - -
Lan9g0174 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0174 Lan-Chr9 2014864 2017290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0174 4 173 C3H Transcription Factor Family AT3G60080 34.314 9.14e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0174 K11982 - gmx:100775530 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0721 5 18375840 18378955 Lan9g0174 9 2014864 2017290 LSH