Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0166 ATGACTTCACCAAATTACGGCACGCGTGAACACGAGCAGTACATGCCAATAGCCAACGTGACAAGGATCATGCGACGCATTCTCCCATCACATGCAAAGATCTCAGACGAAGCAAAAGAAACAGTTCAACAATGTGTCTCTGAATTCATCAGCTTCGTCACTGCCGAAGCAAACGACCGATGCCAACGTGAGCAAAGGAAAACTGTAACTGCAGAAGATCTTCTGTTTGCAATGGAGAAGCTTGGTTTCGATGATTATGTTGAACCTCTTTCTCTTTACCTTCAACGCTACCGTGAGAATGAAGCTGAACCCATTTCTGCTACTAGAGTTGTTAATTATGGTTCTCATTCTCTGCCACCACAGCAACAATTGGCTGGTGCCGTGTCTTATGCTTCTCATTCTCTGCCACCACTACCACCGCAACCATTGGCTGGTGGTGGGTCTTATGGTTCTCATTCTCTGCCACCACCACCACAACCATTGGCTGGTGGCGGGTCTTATGGTTCTCATTCTCTGCCACCACCGCCGCAACCATTGGCTGGTGGTGGGTCTTATGGTTCTCATTCTCTGCCACCACCGCCGCAACCATTGGCTAGTGGTGGGTCTTATGGTTCTGGTTTTACTGCTCCTGCTGTTGGAATGTTTGATCCTTCAGCATCAACATCAGGCATGTCTGGCTCTGGGAATTATAGCATTGCTGCTTTTGATAACATGAAACGTGATCGTATGTGA 732 0.4781 MTSPNYGTREHEQYMPIANVTRIMRRILPSHAKISDEAKETVQQCVSEFISFVTAEANDRCQREQRKTVTAEDLLFAMEKLGFDDYVEPLSLYLQRYRENEAEPISATRVVNYGSHSLPPQQQLAGAVSYASHSLPPLPPQPLAGGGSYGSHSLPPPPQPLAGGGSYGSHSLPPPPQPLAGGGSYGSHSLPPPPQPLASGGSYGSGFTAPAVGMFDPSASTSGMSGSGNYSIAAFDNMKRDRM* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0166 243 PRINTS CCAAT-binding transcription factor subunit A signature 42 60 - -
Lan9g0166 243 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Lan9g0166 243 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Lan9g0166 243 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 78 IPR003958 -
Lan9g0166 243 MobiDBLite consensus disorder prediction 218 232 - -
Lan9g0166 243 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan9g0166 243 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 8 121 - -
Lan9g0166 243 SUPERFAMILY Histone-fold 12 104 IPR009072 GO:0046982
Lan9g0166 243 MobiDBLite consensus disorder prediction 124 243 - -
Lan9g0166 243 Gene3D Histone, subunit A 4 125 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0166 Lan-Chr9 1922673 1925168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0166 8 103 CCAAT-HAP3 Transcription Factor Family AT5G47670 75.000 2.15e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan9g0166 CBFD_NFYB_HMF 1.5e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0166 K08065 - gmx:100811633 172.94