Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0156 ATGGAAGCTGCTTCCTCATCCACACCTTTCTTGGGAATCAGAAAAGAAAATCAAAGTCAGATTACACAACACCAACCACTCACAGTTGGTTCTTCAACTGTTGCTTCAACCATAGTGCCTCAACAGAAAAAGAAGAATCATCCTGGAACAGCATATCCAGATGCGGAAGTAATAGCACTATCTCCAAAGACCCTGATGGCAACAAACAGGTTTATATGTGATGTTTGCAACAAAGGGTTCCAAAGGGAGCAAAACTTACAGCTCCATAGAAGAGGACACAACCTTCCTTGGAAGCTAAAGCAGAAAAGTACAAAAGAGCAAAAGAGAAAGGTTTATATGTGTCCTGAACCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGATCTCACTGGGATTAAGAAACATTACTCTCGTAAGCATGGTGAGAAGAAATGGAAGTGTGAGAAATGCTCTAAGAAATATGCTGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACAAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGGCGTGACAGTTTCATCACTCATAGGGCCTTCTGTGATACACTAGCACATGAAACTGCAAAACACCATACAAATCTAAACCCTTTGGGAACTCATTTGTTTGGCACCACAAACCAAATGAGCTTAAACCTATATCAAGTTGGTGCTCAAATTTCTAACCTTCAAAACCAGAACCATGCAACCACCAACAACAGTATCTTGAGCCATGGCAATGCTGCTTTGGCACCACCAAAGTATGAGCACATTTTCTCATCACCTTTGCATCACCATTCATCATATGGAGTAGTACAGTCACCACATTCAATGTCTAATTCCTCAGCTGGTTTCTTCATGACTGACCCTAATCAAGGATTTCAAGAATTCCAATCTCATCAGCAAGGAACAATCTCAAGCCACAAAGAACTTTATGGCCTTATGCAGCTTCCTGATTTTCAAGGCAACACCAACAATAACAACTCTACTTCTGAATCTGTATCTGTTCCTGCTAATATGTTTAACATCAACTTCTTTACGAATAGCAACAATAGCAGTGGCAACATAATGGCTGGTCAATTCAACAACATCAATGGAGAAGGTAACCAAGAAACAACACTTTATATTAATAACAAGAGCCCTGTGAGTAATCAAGTTGGGTCTGGTAATTTATCTTCACTCTTTGGAAACTCATTTGTGCAACAAGAAACCATGTCGCCGCATATTTCTGCCACTGCATTGCTTCAAAAAGCTGCTCAAATGAGTTCAACCACCAATGCTTCCTCTATGCTAAGAGGGCTAGGTCGTTCCTCAACCAATGGTGCAGAATCTTTTGGAAGTGATAGTAGGAGAGAAGGTATAAGATCAAGCATGGAAAATGACCAACACCATCATCTCCATGGATTGACGAACTCTATTGGAAATGGAAACAATTCCATATATGGTAATATGAAAGGGAATGAAAACAACCTTGGACAGTTTCACAATGTTGAGGAACCTAATAAGTTGTCCCAAAATCTTGGTGTGTGCTTTGGAGAATCTGATAAGTTGACATTAGACTTTTTGGGTGTTGGAGGAATTGTAAGAAACATGAATAGTAGGTTTTCACAAAGAGAGCAACAACACTCTATGGGTTCTACGAGTTCTTTGGATCCTTAA 1680 0.403 MEAASSSTPFLGIRKENQSQITQHQPLTVGSSTVASTIVPQQKKKNHPGTAYPDAEVIALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEQKRKVYMCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDTLAHETAKHHTNLNPLGTHLFGTTNQMSLNLYQVGAQISNLQNQNHATTNNSILSHGNAALAPPKYEHIFSSPLHHHSSYGVVQSPHSMSNSSAGFFMTDPNQGFQEFQSHQQGTISSHKELYGLMQLPDFQGNTNNNNSTSESVSVPANMFNINFFTNSNNSSGNIMAGQFNNINGEGNQETTLYINNKSPVSNQVGSGNLSSLFGNSFVQQETMSPHISATALLQKAAQMSSTTNASSMLRGLGRSSTNGAESFGSDSRREGIRSSMENDQHHHLHGLTNSIGNGNNSIYGNMKGNENNLGQFHNVEEPNKLSQNLGVCFGESDKLTLDFLGVGGIVRNMNSRFSQREQQHSMGSTSSLDP* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0156 559 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lan9g0156 559 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 548 - -
Lan9g0156 559 MobiDBLite consensus disorder prediction 433 453 - -
Lan9g0156 559 Gene3D Classic Zinc Finger 125 207 - -
Lan9g0156 559 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Lan9g0156 559 Gene3D Classic Zinc Finger 53 120 - -
Lan9g0156 559 MobiDBLite consensus disorder prediction 433 459 - -
Lan9g0156 559 MobiDBLite consensus disorder prediction 540 559 - -
Lan9g0156 559 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lan9g0156 559 SMART c2h2final6 112 142 IPR013087 -
Lan9g0156 559 SMART c2h2final6 147 167 IPR013087 -
Lan9g0156 559 SMART c2h2final6 71 93 IPR013087 -
Lan9g0156 559 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 548 - -
Lan9g0156 559 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0156 Lan-Chr9 1774983 1780466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0156 10 538 IDZ Gene Family AT2G02070 44.234 5.10e-125 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan9g0156 zf-C2H2_jaz 7.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0156 K25870 - gmx:100806198 639.802