Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0133 ATGGGGTTGAAAATTTCAAAGCCAGGCCAGCCCAAAATTAATCATAGGCTGAGTTTACAAGATCACATGATAAATTACCTAGCCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGTAGAAGAATGCTAATTGCTGGTTATGATCTTGACATGTCATATATCACAGATAGGGTATTAGCCATGTCATTTCCTTCAGAACGTATGCGTGCAATGTATCGAAATCCTCTTTGGCAAGTCAAATCTGTCTTGGACATGAGACATCAAGACCATTATAAGATCTATAATCTATGTATAGAAGAAAGTTATGACCCAACACACTTTTATGGACGTGTAGAAGCATATCCATTCGATGATAACCATGTGCCACCTCTTGAAATGATCAAAGCTTTCTGTGAAAGTGTGGATTCATGGCTGTCAAGTGACCCAAAAAATATTGCAGTTATACATTGCATGGCAGGGAAGGGGAGAACTGGCTTAATGGTGTGTGCATACCTAACTTATTGTGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGATAGAAGAACAACAAATAATGAAGGAGTATCAATACCAAGCCAGCGTCGTTATGTGGGATATTGGGAGAGTGTGCTTTCTGTGCCTAGGGGTGCTGGAAATGGAGCACCAATTGTGAACTTGCCTCCATCATGCAGCAGAGAATTGAGGCGAATAAGGCTTTATGATACTGTTAACATTGACACTGTATTCTTTGTCATCTCAGAGCTACAACAGGTTCCTAATCAGGTTTATCGTCCTTCAGTGGAAGTTTCTCGAAGCTGTTGCAGACAGGTTAAGAAAGGTTATCAGAGAACGAATAGTCCTCGATATTATATTTCTTATGTTGAAGGTGATGAAAATGGAAACCAAACAGAACAAGAAGAACCTCGTATTGTAGTTCAAATGGACACAGAGAGTCCTATAATATACAAAAAATCATGTCTAGACCATTATTTTGACCAACCTATAAAAGTAACTGGAGATGTACGTGTCATCTTCTATGAGAAAATGATAGGAGGCCGTCTTTTCTATTGCTGTTTTAATACAGCCTTTATCAGGAACAGCTTACTTCAGGCAGGGAAGGGGAGAACTGGCTTAATGGTGTGTGCATACCTAACTTATTGTGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGATAGAAGAACAACAAATAATGAAGGAGTATCAATACCAAGCCAGCGTCGTTATGTGGGATATTGGGAGAGTGTGCTTTCTGTGCCTAGGGGTGCTGGAAATGGAGCACCAATTGTGAACTTGCCTCCATCATGCAGCAGAGAATTGAGGCGAATAAGGCTTTATGATACTGTTAACATTGACACTGTATTCTTTGTCATCTCAGAGCTACAACAGGTTCCTAATCAGGTTTATCGTCCTTCAGTGGAAGTTTCTCGAAGCTGTTGCAGACAGGTTAAGAAAGGTTATCAGAGAACGAATAGTCCTCGATATTATATTTCTTATGTTGAAGGTGATGAAAATGGAAACCAAACAGAACAAGAAGAACCTCGTATTGTAGTTCAAATGGACACAGAGAGTCCTATAATATACAAAAAATCATGTCTAGACCATTATTTTGACCAACCTATAAAAGTAACTGGAGATGTACGTGTCATCTTCTATGAGAAAATGATAGGAGGCCGTCTTTTCTATTGCTGTTTTAATACAGCCTTTATCAGGAACAGCTTACTTCAGCTCACAATAAGGGACTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGTCCTGCATTTTGCGTCGAATTACTCTTCGGCCCCGCGAATACAGGACTTTCATCATCAAGCATATCCATTGGTGACACTTTTAGTGATGATACATTCTAA 1893 0.3962 MGLKISKPGQPKINHRLSLQDHMINYLAKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPSERMRAMYRNPLWQVKSVLDMRHQDHYKIYNLCIEESYDPTHFYGRVEAYPFDDNHVPPLEMIKAFCESVDSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVGYWESVLSVPRGAGNGAPIVNLPPSCSRELRRIRLYDTVNIDTVFFVISELQQVPNQVYRPSVEVSRSCCRQVKKGYQRTNSPRYYISYVEGDENGNQTEQEEPRIVVQMDTESPIIYKKSCLDHYFDQPIKVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVGYWESVLSVPRGAGNGAPIVNLPPSCSRELRRIRLYDTVNIDTVFFVISELQQVPNQVYRPSVEVSRSCCRQVKKGYQRTNSPRYYISYVEGDENGNQTEQEEPRIVVQMDTESPIIYKKSCLDHYFDQPIKVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTIRDLDKVGKKGRSICGPAFCVELLFGPANTGLSSSSISIGDTFSDDTF* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0133 630 Gene3D Protein tyrosine phosphatase superfamily 27 209 IPR029021 -
Lan9g0133 630 Gene3D Protein tyrosine phosphatase superfamily 365 423 IPR029021 -
Lan9g0133 630 CDD PTP_PTEN 51 204 IPR045101 GO:0016791
Lan9g0133 630 Pfam Tyrosine phosphatase family 135 181 IPR026893 GO:0004721
Lan9g0133 630 Gene3D - 508 612 - -
Lan9g0133 630 ProSiteProfiles C2 tensin-type domain profile. 455 610 IPR014020 -
Lan9g0133 630 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 367 612 - -
Lan9g0133 630 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 366 - -
Lan9g0133 630 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 514 609 IPR035892 -
Lan9g0133 630 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Lan9g0133 630 ProSiteProfiles Phosphatase tensin-type domain profile. 236 424 IPR029023 -
Lan9g0133 630 ProSiteProfiles C2 tensin-type domain profile. 241 426 IPR014020 -
Lan9g0133 630 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 367 421 IPR029021 -
Lan9g0133 630 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 300 364 IPR035892 -
Lan9g0133 630 PANTHER BNAC03G16750D PROTEIN 1 366 - -
Lan9g0133 630 PANTHER BNAC03G16750D PROTEIN 367 612 - -
Lan9g0133 630 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 207 IPR029021 -
Lan9g0133 630 SMART PTEN_C2_2 437 609 IPR014020 -
Lan9g0133 630 SMART PTEN_C2_2 223 378 IPR014020 -
Lan9g0133 630 Pfam C2 domain of PTEN tumour-suppressor protein 518 607 IPR014020 -
Lan9g0133 630 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311|GO:0016791
Lan9g0133 630 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0133 Lan-Chr9 1545426 1553133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0133 367 610 Protein tyrosine phosphatase (PTP) family AT5G39400 67.073 3.97e-113 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0133 K01110 - gmx:100809938 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0133 9 1545426 1553133 Lan2g0114 2 983516 988434 LSH