Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0111 ATGGGAAGAGGTAGGGTTCAGTTGAAGAGGATTGAGAACAAAACAAGTCAACAAGTTACATTTTCAAAACGAAGAACAGGACTTCTCAAAAAAGCACATGAGATCTCTGTGTTATGTGATACTCAAGTAGCTTTGATTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCTTCTGAACCTAGCGTGGAAAACGTGCTGGAACGATATGAGAGACATGCACATACAATACATGCTGGAGCTAATAATGAATCACAGGAAAACTGGTCTTTCGATTACTTCAAGCTCACGGCTAAAGCTGAAGTTTTAGAGAGGAATATAAGGAACTTTGCTGGATATGATTTGGATCCTTTGAATTTGAAAGAGCTACAGAATTTGGAGCATCAGCTTGACACTGCTCTTAAGCGCATTAGAACAAGAAAGAACCAAGTTTTGAACCAATCCATCTCAGAGATGCAAAAAAGGACAAGGACATTGCAGGAACAAAACAGTATGCTTGCAAAGATGAAGGAGAAAGAGAAGACACTAACTGAAAATTCACAACCAGAAACACTAGGCCAAAGTTCATCACCCTTCAACTTGTCTTCTCAAAAGCAACTTCTGCGCCAAAGACAAGTTCCTTGTCTAACTCTAAGAGCATCCCCGGAGGAAGCAGTTGGAGCTCAAACCGCCGCCGCGGGTGGCGGCAACACACTGATCCCACCATGGATGCTGCATGGTTGA 723 0.4191 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDTQVALIMFSTKGKLFEYSSEPSVENVLERYERHAHTIHAGANNESQENWSFDYFKLTAKAEVLERNIRNFAGYDLDPLNLKELQNLEHQLDTALKRIRTRKNQVLNQSISEMQKRTRTLQEQNSMLAKMKEKEKTLTENSQPETLGQSSSPFNLSSQKQLLRQRQVPCLTLRASPEEAVGAQTAAAGGGNTLIPPWMLHG* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0111 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan9g0111 240 MobiDBLite consensus disorder prediction 170 197 - -
Lan9g0111 240 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Lan9g0111 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan9g0111 240 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lan9g0111 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan9g0111 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan9g0111 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan9g0111 240 MobiDBLite consensus disorder prediction 179 197 - -
Lan9g0111 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan9g0111 240 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan9g0111 240 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 217 - -
Lan9g0111 240 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lan9g0111 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan9g0111 240 PANTHER MADS BOX PROTEIN 1 217 - -
Lan9g0111 240 Coils Coil 120 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0111 Lan-Chr9 1327210 1340965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0111 1 188 MADS-box Gene Family AT1G26310 58.763 2.56e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan9g0111 K-box 9.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0111 K09264 - gmx:100786580 288.115