Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0109 ATGGGTTCTGTTTATTGTTGTATCAGAGTTGATGATTTTGAAGATTATATGAATCGAAACAGTCCTGTATATAGGGCGTGCCCGTGTCTCGGTTGCTTCATGCAGAACCTTTTGAATGTTTATGCATTAATATTCCGTAGAGGGGAAGTGCGTGCAATTCCTTCGTCTATACAGGGAGCAGCATCTATGACTTCTACAGCATCACTCGACAATCCACTGTCTGACATTTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGCTCACAGCGTGATGGACTAGTTTCAAGACGCGAGAAAGGTTCAAGTCATACAAATGAAGAGTCAGAGCCTCTTAGAATTGATGTAGATGTGGATCCGGAGTCTTTAAATACGGGTGGGAAATGGAACGATGGTGCCGGTGACGATGGATCAAAGGAATACCGTTCTAAGTCCTTACTAAGACTTTCATCTGCAAAACTTACAACCGGAGCTGGTTTCGTCTATTCTTCATCGGAAGAGGAGGATGTGTGCCCAACTTGTCTTGAAGAATACACCGAAGAGAATCCGATGATAGTAACAAAATGCTCTCACCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGAGACCTGTCCAGTTTGCGGGAAGGAGATGGAATTCGATGAAACGACTTAA 684 0.4401 MGSVYCCIRVDDFEDYMNRNSPVYRACPCLGCFMQNLLNVYALIFRRGEVRAIPSSIQGAASMTSTASLDNPLSDIYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHTNEESEPLRIDVDVDPESLNTGGKWNDGAGDDGSKEYRSKSLLRLSSAKLTTGAGFVYSSSEEEDVCPTCLEEYTEENPMIVTKCSHHFHLGCIYEWMERSETCPVCGKEMEFDETT* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0109 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Lan9g0109 227 SMART ring_2 177 217 IPR001841 -
Lan9g0109 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Lan9g0109 227 Pfam Ring finger domain 176 217 IPR001841 -
Lan9g0109 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Lan9g0109 227 MobiDBLite consensus disorder prediction 70 143 - -
Lan9g0109 227 SUPERFAMILY RING/U-box 172 223 - -
Lan9g0109 227 MobiDBLite consensus disorder prediction 91 123 - -
Lan9g0109 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 226 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0109 Lan-Chr9 1310341 1315541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0109 1 226 C3H Transcription Factor Family AT5G15790 58.442 1.25e-94 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0109 - - gmx:100788192 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0109 9 1310341 1315541 Lan2g0105 2 909300 913420 LSH
Lan9g0109 9 1310341 1315541 Lan8g0158 8 2624595 2628945 LSH