Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0092 ATGTTGGAAGATGACACCAAAGCCATCAGAACTGCGGGATGCAATAACTGGCCGTCTCGCATATGCGACACGTGCCATGCCGCAACATGTACGGTGTTTTGCCGTGTGGACTCTGCATACCTATGCGCCAAGTGCGACACAAGAGTCCACACGGCAAACCATATGAAGTCGCGGCACGAGCGCGTGTGGGTATGCGAAGCGTGCCAACATGCACCTGCCGCATTTCTTTGCAAGGCGGACGCAGCTTTGCTGTGTTCGTCTTGCGATGCATACATCCACTCCGCCAACTCACTCACCAGCCGCCACCACCGCGTGCCAATCCTGCCCATCTCCGGTTTCCTCCACGGCCCTCCCAACACCACCATCCAAGATGATGGGTTTGAGAGTGGCCATAAAGAGGATGAAGGTGTTGATGTTGAAGATGAAAATGAAGCAGCTTCATGGCTGTTACTGAACCCTGTGAAGAACAATAGCAGCAACAACACCAATGAGCAGAGTAATGGATTCATGTTTGATGAGTATTTGGACCAAGTGGATTATAATTCTTGTGGTGACAATTATAGGCAGCAGAATCAGCATCAACAACAAGGACAGAATTTTCAACTTGGGTTGGATTTTGATCAGTCTCCAAGGTTCAGTTACAATGGTTCTATTGCTCAAAGTGTTTCAGTTTCATCAATAGATGTTGTTATTGTTCCAGAATCAACTATGAGGGATGTCTTAATTTCCCATCCAAGTCCTACACAAGGGACAATTGACCTACTTTATGGACCTTCTTGCCATCTTACCCCAATGGATAGGGAGGCCAGAGTCCTAAGGTATAGGGAGAAAAAGAAAACACGAAAATTTGAGAAGACGATTCGGTATGCTTCGAGGAAGGCCTATGCCGAGACTAGACCTCGCGTAAAAGGTCGATTTGCGAAGAGAACTGATGTAGAAGCCGAGGTGGATCAGATGTTTTCCTCATCACTAATCACAGAAGTTGAATATGGCATTGTCCCCTCTTTCTGA 1011 0.4728 MLEDDTKAIRTAGCNNWPSRICDTCHAATCTVFCRVDSAYLCAKCDTRVHTANHMKSRHERVWVCEACQHAPAAFLCKADAALLCSSCDAYIHSANSLTSRHHRVPILPISGFLHGPPNTTIQDDGFESGHKEDEGVDVEDENEAASWLLLNPVKNNSSNNTNEQSNGFMFDEYLDQVDYNSCGDNYRQQNQHQQQGQNFQLGLDFDQSPRFSYNGSIAQSVSVSSIDVVIVPESTMRDVLISHPSPTQGTIDLLYGPSCHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRVKGRFAKRTDVEAEVDQMFSSSLITEVEYGIVPSF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0092 336 Pfam CCT motif 267 309 IPR010402 GO:0005515
Lan9g0092 336 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 19 336 IPR045281 GO:0009909
Lan9g0092 336 SMART bboxneu5 65 107 IPR000315 GO:0008270
Lan9g0092 336 SMART bboxneu5 17 64 IPR000315 GO:0008270
Lan9g0092 336 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Lan9g0092 336 MobiDBLite consensus disorder prediction 118 139 - -
Lan9g0092 336 ProSiteProfiles CCT domain profile. 267 309 IPR010402 GO:0005515
Lan9g0092 336 CDD Bbox1_BBX-like 21 64 - -
Lan9g0092 336 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Lan9g0092 336 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 19 336 - -
Lan9g0092 336 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Lan9g0092 336 CDD Bbox1_BBX-like 64 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0092 Lan-Chr9 737470 739835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0092 17 336 C2C2-CO-like Transcription Factor Family AT3G02380 52.809 2.51e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan9g0092 zf-B_box 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0092 - - lang:109356104 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0092 9 737470 739835 Lan8g0141 8 2372060 2374912 LSH
Lan20g1344 20 20118710 20122437 Lan9g0092 9 737470 739835 PCT
Lan9g0092 9 737470 739835 Lan20g1344 20 20118710 20122437 PCT