Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0071 ATGTTTTTGTACATCACCTTTTTCTCACATCCCAAAAACCCTAAACATTATAACAAACCATTCTCTCAAATTTCCCTTCACTCTTTTTCTCTCTCTTTTATAATGGCATTGAATCCAAAAAAACAAAATCAAAAAAATCAAAAAAATCAAAAACTAGAAGAAGAAGAAGAAGAAGAAGAAACAAGAGAAGAAGGGAGTACTCCTCTACGGTACATCCCACTCGATAATCTCTACTCCGCCACGTCACCTTGTCGTGTCACCGTCATGTCTAAGAAAGTTAAAGCTCATAAACTCCCTCATCAAAACGACGACGTTGTTAATCTTCTTCACAAAACGACGACGCTTCATGAAAACGACGACGACGACGTTGTTGTTGATCTTGTTCCGAAAACGATGCCGTCTCGTGCTCCGACTAAGCCTCCGGTTCTATTTGTTTACTCTCGCCGGAGAAAGAGGGGGCAGCATTATGTTAAAACGAAGTCGTTTTATGAGTCGTTGATGGAACAAAACGATGAAATTGAAATCGAAGAAAGTCGGTTTAATAAGAAGAGGAAAATTGGGAGTACTGAGTTGGAGAAATTGGGTGTGGATTTGAGTGCATTCAGTGTTGATAATTTCTATGGTTCGAGATTTAGAGAATGTCGTAATTCTGGGAAGAGTAATGGTGTTGGTTCTTTGAAGAATTTTCCGAAGTTAGTTTCGGAGTCTGTGAAGAGATGGATAGGGTTGAGTTTTGACAATGCTGATCCTGAGGCATTCATTGGATTACGATGCAAGGTTTACTGGCCCATGGATGATAAATCATATTCTGGCTATGTCAAGGGTTATGATACAGAAACTAAGATACATAATGTTAAGTATGATGATGGCGATGAGGAAAATTTAGTACTTTCAAAAGAAAATGTAAAATTCCATGTTTCCCGTGATGAGGTGAAACGTTTAAATTTGTGTTATGCCAAAGTTCGTGACAGTATTGTCTCTGATTATGACATTGAAGAGATGCTTGCATTGGCTGCAAGTCTGGATGACTGTCAAAATTTTGAGCCTGGAGATATTGTATGGGCCAAGCTAACAGGGTATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTGAAAATGCTTTTAGGAGGAAGATCGGTTCCTGTCCAATTTTTTGGAACTCATGATTTTGCAAGGGTTAGAGTTCAGCAGGTGAAATCATTTCTCGGAGGACTTCTTACTGAACTACACTCGAAGTGCAAGAAAATTAGTTTTATTGAAGGCATAGAGGAGGCAAGAAGGTATTTAGGTGAACAGAAACTTCCTCAGGCGATGCTTGAGTTGCAGAAAGGATGTATAGTTGATGACGGTAACCATGTAAGTGGGGAGGATGGGGGATGTACAAATTCCGGTGAAGATTGTTTAAATGATAAAGGAGCTTGGATGGCAATGGAAATCATTGAAACTTTTCCTTATGAAGTAGGAGACATGCAAATTATAAGCCTTGGAAAAATCGTTGAAGATTCTGCATCTTTCAGGGATGGAAGATCCATCTGGCCTGAAGGGTACACAGTAGTGAGGAAGTTTACTTCAGTTACTGACCCTAAAGTATCTGCCCTCTATAAGATGGAGGTGTTAAGAGATCCAGAATCCAAAGCTCAACCTCTTTTTAGAGTCACTGTTGATGGCGGTGAACAGTTTAATGGCTGTACACCATCTGCTTGCTGGAATCAGATATACAAAAGGATAAAGAAAATGGAAAAGGATGATTCTGAAGGTTCTGTTACAGAAGCTGCAGTAGAAATGGGCTATGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCCAAAGTGTCTAAACTTATCCAGGGATTATCTAAAGCCAAAGTCACTTCCAAGAATTCAATTTCCAAGTCAGGTTCCAAAAGATATAATGACTTGCCTGTTGGTTATAGGCAAGTTCACATTAATTGGTCTGATCTTGATAAGTGCAATGTGTGCCACATGGATGAGGAGTACGAGAACAATTTATTTCTACAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAAGTGGAACCTGTTAATGGAGTGCTATGGTTATGCAAATTATGTCGTTTGGGTGCTGCTTCTCCGCCACCTTGCTGCTTATGTCCACTCATTGGAGGTGCAATGAAGCCTACAACAGATGGCCGTTGGGCTCATTTAGCTTGTGCCATATGGATACCTGAAACTTGTTTGGCCGATGTTAAGAGAATGGAGCCTATTGATGGATTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGTAGCATATGTGGGGTCCCTTATGGTGCCTGCATCCAATGTTCAAACAACTCTTGTCGAGTAGCATATCACCCACTTTGTGCACGTGCTGCTGGTCTCTGTGTGGAGCTCGAGAATGAGGACCGGCTCTATCTACTATCTTTTGATGATGATGAAGATCAGTGCATACGCCTACTTTCTTTCTGCAAAAAACATAGGCAGCCATCTAATGAACCTTATTTTGCCGATGAACGTATTGCTCGAGTTGTCAGTCCATGTTCAGACTATGGTCCACCAACCAACCCGTCTGGTTGTGCTCGATCTGAGCCATATGATTACTTTGGAAGGAGAGGCCGAAAGGAACCTGAAGCACTTGCAGCTGCATCGCTGAAACGCTTGTTTGTAGAGAACCAACCTTACTTGGTAGGTGGATACTGCCAGCATGGATTGTCAAACAACCTAGAGACTTCTGGCAGAGGAGTCTGTGCTAAATTCTTTTGTAGCCAGCAAAGGCTGAGAACCTCTCTGACTGATGCTCCGAACAACATACTTTCTATTGCTGAGAAATATAAGTACATGAGGGAAACCTTCCGGAAGCGACTAGCATTTGGAAAATCAAGAATTCATGGATTTGGCATCTTCGCAAAGCATCCACATAAAGGCGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTACCGTTGCTGATCGGAGAGAGCACTTTATATACAATTCGTTAGTGGGTGCTGGAACATATCTGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGAACCAAATTGCTATTCAAGAGTTATAAGTGTTAATGGTGATGAACATATTATAATATTTGCGAAGAGGGACATTAAACAATGGGAAGAGCTCACATATGACTACAGATTTTTCTCGATTGATGAACGTCTTCCTTGTTACTGCGGCTTCCCAAAATGCCGAGGTGTAGTTAATGATACTGAAGCAGAAGAGCGAGCTGCTAAGCTATATGCACCTCGAAGCGATTTAACAGATTGGAGAGGATGA 3393 0.412 MFLYITFFSHPKNPKHYNKPFSQISLHSFSLSFIMALNPKKQNQKNQKNQKLEEEEEEEETREEGSTPLRYIPLDNLYSATSPCRVTVMSKKVKAHKLPHQNDDVVNLLHKTTTLHENDDDDVVVDLVPKTMPSRAPTKPPVLFVYSRRRKRGQHYVKTKSFYESLMEQNDEIEIEESRFNKKRKIGSTELEKLGVDLSAFSVDNFYGSRFRECRNSGKSNGVGSLKNFPKLVSESVKRWIGLSFDNADPEAFIGLRCKVYWPMDDKSYSGYVKGYDTETKIHNVKYDDGDEENLVLSKENVKFHVSRDEVKRLNLCYAKVRDSIVSDYDIEEMLALAASLDDCQNFEPGDIVWAKLTGYAMWPAVVLDESLASNCKGLKMLLGGRSVPVQFFGTHDFARVRVQQVKSFLGGLLTELHSKCKKISFIEGIEEARRYLGEQKLPQAMLELQKGCIVDDGNHVSGEDGGCTNSGEDCLNDKGAWMAMEIIETFPYEVGDMQIISLGKIVEDSASFRDGRSIWPEGYTVVRKFTSVTDPKVSALYKMEVLRDPESKAQPLFRVTVDGGEQFNGCTPSACWNQIYKRIKKMEKDDSEGSVTEAAVEMGYESGSDMFGFSNPKVSKLIQGLSKAKVTSKNSISKSGSKRYNDLPVGYRQVHINWSDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGEVEPVNGVLWLCKLCRLGAASPPPCCLCPLIGGAMKPTTDGRWAHLACAIWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVPYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSFDDDEDQCIRLLSFCKKHRQPSNEPYFADERIARVVSPCSDYGPPTNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGLSNNLETSGRGVCAKFFCSQQRLRTSLTDAPNNILSIAEKYKYMRETFRKRLAFGKSRIHGFGIFAKHPHKGGDMVIEYTGELVRPTVADRREHFIYNSLVGAGTYLFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLPCYCGFPKCRGVVNDTEAEERAAKLYAPRSDLTDWRG* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0071 1130 Pfam PHD-finger 677 711 - -
Lan9g0071 1130 SMART fyrn_3 505 549 IPR003888 GO:0005634
Lan9g0071 1130 SMART set_7 967 1091 IPR001214 GO:0005515
Lan9g0071 1130 SMART PostSET_3 1091 1107 IPR003616 -
Lan9g0071 1130 SMART PHD_3 775 841 IPR001965 -
Lan9g0071 1130 SMART PHD_3 664 711 IPR001965 -
Lan9g0071 1130 ProSiteProfiles Zinc finger PHD-type profile. 662 713 IPR019787 -
Lan9g0071 1130 ProSiteProfiles FYR domain FYRC motif profile. 553 640 IPR003889 GO:0005634
Lan9g0071 1130 SUPERFAMILY Tudor/PWWP/MBT 252 296 - -
Lan9g0071 1130 Gene3D - 491 631 - -
Lan9g0071 1130 ProSiteProfiles Extended PHD (ePHD) domain profile. 717 841 IPR034732 -
Lan9g0071 1130 ProSitePatterns Zinc finger PHD-type signature. 665 710 IPR019786 -
Lan9g0071 1130 ProSiteProfiles PWWP domain profile. 349 412 IPR000313 -
Lan9g0071 1130 SUPERFAMILY SET domain 964 1104 IPR046341 -
Lan9g0071 1130 MobiDBLite consensus disorder prediction 40 67 - -
Lan9g0071 1130 CDD ePHD_ATX1_2_like 720 840 IPR041956 -
Lan9g0071 1130 Pfam F/Y rich C-terminus 555 631 IPR003889 GO:0005634
Lan9g0071 1130 Gene3D - 337 446 - -
Lan9g0071 1130 ProSiteProfiles FYR domain FYRN motif profile. 490 549 IPR003888 GO:0005634
Lan9g0071 1130 Pfam F/Y-rich N-terminus 496 546 IPR003888 GO:0005634
Lan9g0071 1130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 714 IPR013083 -
Lan9g0071 1130 ProSiteProfiles Post-SET domain profile. 1091 1107 IPR003616 -
Lan9g0071 1130 PANTHER PHD FINGER PROTEINS 55 1128 - -
Lan9g0071 1130 Pfam PHD-zinc-finger like domain 719 840 - -
Lan9g0071 1130 SMART PWWP_4 347 410 IPR000313 -
Lan9g0071 1130 SUPERFAMILY Tudor/PWWP/MBT 343 444 - -
Lan9g0071 1130 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 55 1128 - -
Lan9g0071 1130 ProSiteProfiles SET domain profile. 967 1085 IPR001214 GO:0005515
Lan9g0071 1130 Pfam SET domain 978 1084 IPR001214 GO:0005515
Lan9g0071 1130 Coils Coil 163 183 - -
Lan9g0071 1130 SUPERFAMILY FYVE/PHD zinc finger 766 805 IPR011011 -
Lan9g0071 1130 CDD PHD_ATX1_2_like 664 710 IPR042010 -
Lan9g0071 1130 Pfam PWWP domain 350 437 IPR000313 -
Lan9g0071 1130 Gene3D SET domain 918 1121 IPR046341 -
Lan9g0071 1130 Coils Coil 38 65 - -
Lan9g0071 1130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 843 IPR013083 -
Lan9g0071 1130 SUPERFAMILY FYVE/PHD zinc finger 656 728 IPR011011 -
Lan9g0071 1130 SMART fyrc_3 557 651 IPR003889 GO:0005634
Lan9g0071 1130 CDD SET_SETD1-like 955 1103 - -
Lan9g0071 1130 Gene3D - 247 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0071 Lan-Chr9 513782 540093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0071 665 811 C2H2 Transcription Factor Family AT3G14740 39.735 6.55e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan9g0071 zf-HC5HC2H_2 1.6e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0071 - - lang:109356942 2272.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0071 9 513782 540093 Lan2g0080 2 723613 737440 LSH