Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0055 ATGGTCGGTGGCGGTGGCAACGGCGATGATCACCACCGCAAAATGTTCTGGCGCTCCGCCTCTTGGTCAGCCTCCCGCACCGCCGCACCCGGAAACACCACCACCACCAACAACAACTCTTCCGGTGAGGTGGGTAATGATTTCTCCGATCCCAATCCCGGCGACGGCCACAATCGACGGTTCCATTTGCCGCCGCTGACGCCTCGGTCGCAGCACCAAAGTTCCAAGGCCCGGTCGTGCCTGCCGCCGCTCTCCATTGCTCCCCGGAGCATGGACGAGTGGCCGAAGGCGAGCTCGGACGATATCGGCGAGTGGCTGCAGCTCCCCACCACACCTAGTGGTGGTGGGAGAGGTAATAATAGTAATAATAATAATAATAATGGTGAAAGATTGAAACTTGATTTGTCTTCAATTCAGCAAAATCATGATAATGGTTATAATAGTAATTGTAACAATAGTGTTGGACTTGTGAAGAGAGATAAAATTGCATCTTTTGATAAGGAATGTTCAAAAGTTGCTGATCATGTTTACCTTGGTGGTGATGCTGTTGCTAAAGATAGAGATATTTTGAAACAAAATGGAATCACTCATGTTTTGAATTGTGTTGGTTTTGTTTGTCCTGAGTACTTTAAAGCCGATTTTGTGTATAGGACATTGTGGCTTCAGGATAGTCCTTCCGAGGATATTACGAGTATTCTGTATGATGTTTTTGATTACTTTGAGGATGTTAGGGAATTGGGTGGGAGGGTGTTTGTGCATTGTTGCCAAGGGGTGTCTAGGTCCACTTCTTTGGTCATTGCATACCGTATGTGGAGGGAAGGTCAGAGTTTCGATGATGCTTTTCAGTATGTTAAGGCAGCGAGAGGTATCGCTGATCCGAATATGGGTTTTGCTTGCCAGTTGTTACAGTGCCAGAAAAGGGTCCATGCTGTTCCTCTTAGCCCTAGCTCTTTGTTGAGGATGTATAGAATTGCTCCGCATTCGCCGTATGACCCTTTGCATCTTGTCCCAAAAATGTTGATGGATCCTTCTTCGTCTGCGTTGGATTCCAGAGGTGCGTTTATTGTACACATACCTTCTGCGATGTATGTTTGGATTGGTAAGAATTGTGAGGCTATTATGGAAAGGGATGCTAGAGGGGCTGTGGGTCAGATCGTTCGCTATGAGAAAGTGCAAGGACCTGTTATAATGATTAAGGAAGGCGATGAGCCGTCTTACTTTTGGGATGCTTTTTCGAAATTCTTGCCTCTGATGGTCAAATCTGGGAATGGGGTAGGAAATATCAAATCGAGTGTTAAGGTTTGGCCTGGTGAGAGGAAAGTAGGCTCATATGATCCTGATTTTGAAGTTTTCGGAAGAGCTATTAAAGGAGGTATCATGCCTCCGTTTACATCATCAGATGATGAACATGAAACCGTTCTTCCTGCTAGAGACAGTAGCTGGAGTGTTTTAACACGTAAAGTTTCCTCCGCTACTACGAAGGAGTTTGTCTCAGCCCCCAAGTTACCCTTTCCAAGGGTTTATTCAGATTCCATGTTGTACATTCATACATCAGCAAATTCATTTCAACCCCTGCCACTGTCATCATCGTCATTATCCTTATCATCATCGTCTTCACCCTTTTGTGTCTCTCTAGATTCCATTTCCTCTAATTCAAACACTCATTCAAAGTTTTTATCAGAATTGACACCAGATTCTTCCTCCAAAGTTTCCGCTTATGTTCCAGTATCTTCACCGTTGTCTAACTTTTCTAATTTATCTCTCTCTTCAAGTTCTTCTCATCCAGTGTCTACCAGTGCAGATATCCACGGTGTCAAGTTATCACATCCTCATTCTCAGTCAGCCTCTTTACCATTGAAAAAACCACCAACTTCCCTTGCTGAGCGCAGAGGTAGTTTGTCGAAGTCCTTGAAGTTGCCACCAATGAATGATAATACACAATTAACAAATAAACCGCCGACTTTTCATGCCAGTCCAAAGGTTGGAGTTCTTATGAATGACAATGTGAGCTATTTACATCAGTCAGATAGTCCAGATCATTTTTATGAGGACGGCCATTTGAATCATAAAGGTGTGAGTTCTCCTCAACAGTGTGAGCTGACCTCAAGTCCGGGCAACGTTGATGGTGTGGATTACAAGGAATCTTCAAAAGAAGACTTAAAGTGTACTTCATCAGATGGAACTGATGACAGTGGTTTACTGCAACGTAGCATGACCGAATCTTCAGTGTATCACTGGCCCAGTTTAGAAAAGATTGACACATTTGGTGCAAGTCATCTGGATTCTAAAGCTGCTTTTGTCATTTTCTCTCCAAGTATGCCGATGCGTGCAGGAAACATTTTATATTTTTGGTTAGGGAGGTCTTTCAATTGCGGCGGTACTTCACAGGTTCAGTTAGATAGTGATAGAGAATCAGATTTTCCAAGAGCAGTTGATTGGAATGGAATTGGTGGCGACATCCTTGCTCAGTTTAGTTTGCCAAAGAATACCATCATCAAGATTGTGAAAGAGAATGAAGAACCACAAGAATTCCTCGATTTGCTGAGTTCATTGTAG 2556 0.4382 MVGGGGNGDDHHRKMFWRSASWSASRTAAPGNTTTTNNNSSGEVGNDFSDPNPGDGHNRRFHLPPLTPRSQHQSSKARSCLPPLSIAPRSMDEWPKASSDDIGEWLQLPTTPSGGGRGNNSNNNNNNGERLKLDLSSIQQNHDNGYNSNCNNSVGLVKRDKIASFDKECSKVADHVYLGGDAVAKDRDILKQNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVRELGGRVFVHCCQGVSRSTSLVIAYRMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAVPLSPSSLLRMYRIAPHSPYDPLHLVPKMLMDPSSSALDSRGAFIVHIPSAMYVWIGKNCEAIMERDARGAVGQIVRYEKVQGPVIMIKEGDEPSYFWDAFSKFLPLMVKSGNGVGNIKSSVKVWPGERKVGSYDPDFEVFGRAIKGGIMPPFTSSDDEHETVLPARDSSWSVLTRKVSSATTKEFVSAPKLPFPRVYSDSMLYIHTSANSFQPLPLSSSSLSLSSSSSPFCVSLDSISSNSNTHSKFLSELTPDSSSKVSAYVPVSSPLSNFSNLSLSSSSSHPVSTSADIHGVKLSHPHSQSASLPLKKPPTSLAERRGSLSKSLKLPPMNDNTQLTNKPPTFHASPKVGVLMNDNVSYLHQSDSPDHFYEDGHLNHKGVSSPQQCELTSSPGNVDGVDYKESSKEDLKCTSSDGTDDSGLLQRSMTESSVYHWPSLEKIDTFGASHLDSKAAFVIFSPSMPMRAGNILYFWLGRSFNCGGTSQVQLDSDRESDFPRAVDWNGIGGDILAQFSLPKNTIIKIVKENEEPQEFLDLLSSL* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0055 851 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 309 IPR029021 -
Lan9g0055 851 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 227 288 IPR000387 GO:0016311|GO:0016791
Lan9g0055 851 MobiDBLite consensus disorder prediction 675 733 - -
Lan9g0055 851 CDD DSP 169 303 - -
Lan9g0055 851 Gene3D Severin 319 415 IPR029006 -
Lan9g0055 851 ProSitePatterns Tyrosine specific protein phosphatases active site. 252 262 IPR016130 GO:0016311|GO:0016791
Lan9g0055 851 Gene3D Protein tyrosine phosphatase superfamily 136 310 IPR029021 -
Lan9g0055 851 SUPERFAMILY Actin depolymerizing proteins 315 420 - -
Lan9g0055 851 MobiDBLite consensus disorder prediction 690 704 - -
Lan9g0055 851 SMART dsp_5 168 307 IPR020422 GO:0006470|GO:0008138
Lan9g0055 851 MobiDBLite consensus disorder prediction 607 656 - -
Lan9g0055 851 MobiDBLite consensus disorder prediction 20 47 - -
Lan9g0055 851 MobiDBLite consensus disorder prediction 638 654 - -
Lan9g0055 851 MobiDBLite consensus disorder prediction 711 725 - -
Lan9g0055 851 ProSiteProfiles Dual specificity protein phosphatase domain profile. 168 310 IPR020422 GO:0006470|GO:0008138
Lan9g0055 851 MobiDBLite consensus disorder prediction 112 130 - -
Lan9g0055 851 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 12 845 - -
Lan9g0055 851 Pfam Dual specificity phosphatase, catalytic domain 176 306 IPR000340 GO:0008138|GO:0016311
Lan9g0055 851 MobiDBLite consensus disorder prediction 1 130 - -
Lan9g0055 851 PANTHER MKPA PROTEIN 12 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0055 Lan-Chr9 377303 382343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0055 13 204 Protein tyrosine phosphatase (PTP) family AT3G55270 56.410 1.07e-50 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0055 - - gmx:100777406 1075.85