Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0040 ATGGCTTTGCAGAACATTGGTGCTGGGAATAGTGATGATGCCTTCTATAGGTACAAGATGCCTAGAATGATAACGAAAATCGAGGGAAGAGGTAATGGCATTAAAACAAATATTGTCAATATGGTTGATATTGCAAAAGCGTTGGCAAGGCCAGCTGCTTACACGACCAAGTATTTTGGTTGTGAACTTGGAGCGCAATCGAAATTTGAAGAGAAGACTGGCACTTCTCATGTTAATGGAGCACACGATACTGCAAAACTTGCAGGCCTTCTTGAGAACTTCATCAAGAAATATGTCCAGTGTTATGGTTGTGGGAATCCGGAGACCGAGATTCTGATTACTAAGAGTCAAATGATCCAGCTGAAATGCGCTGCTTGCGGTTTTGTGTCCGATGTGGATATGAGAGATAAGCTGACTACCTTTATCATCAAGAACCCTCCTGAAGTGAAGAAAGGAGCCAAAGACAAGAAGGCTATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAGCTGCAGACGAGGAACTGAAGAAGATAAAGAAAGAGGTTAAGAAGAAAGTTCCTTCTTCTTCGAAGACTGGAACTACGAAACCTGCCTCTTCGAAGAAGAAAGGAAGCGGCTCCGATGAAGACCGCATATCGCCTACTCACAGTCAAGTTGATGACAAGGAAGTTGATCACGACGAAGATGAAGACGACGATGACGATGTACAATGGCAAACCGATACATCAATAAATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCTACAAATGAACCAGAGAAGAAGAAAAAATCTTCAACTAAGACAAGCAATGGTTCCGATAACGGTATCCCAATTGACCATAGTAAACTGGTGGACGAAGTGAAAGCAAGTTTGAAGAAAGGCATCGGCGCGAAAGAACTGCAGACCCATCTAGCAGCACTTCCCGGATCCGCTCAAGAAAAAACGAGTGCCCTTTATGAAGCCATATTCGATGGCATCGAGAAAGGGTTTGCGAAAGAAGCAATCAAGAAGAAGAGCTACCTTGCAGCTGCTGTTGCTGATGAGGGTTCACAGTCCTTATTGCTGCATGCAATTGAGGAATTTTCGGGTAACTCCAATTCCAATGCATTGAAGGAAGTAGCACTGGTTTTGAAGGCACTTTATGATGCTGATGTGTTGGAAGAAGAACATATAGTGAAGTGGTATGAGAAAGGAGTGAAAGGTGATAATAACAAAGACTCTCAGATTTGGAAGAATGTTAAACCCTTTATTGATTGGCTTCAGACTGCAGAATCAGAATCAGAGGAAGAGTAA 1335 0.4315 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFEEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGAKDKKAMRRAEKERLKEGEAADEELKKIKKEVKKKVPSSSKTGTTKPASSKKKGSGSDEDRISPTHSQVDDKEVDHDEDEDDDDDVQWQTDTSINAARQRIQEQLSAVTADMVMLSTNEPEKKKKSSTKTSNGSDNGIPIDHSKLVDEVKASLKKGIGAKELQTHLAALPGSAQEKTSALYEAIFDGIEKGFAKEAIKKKSYLAAAVADEGSQSLLLHAIEEFSGNSNSNALKEVALVLKALYDADVLEEEHIVKWYEKGVKGDNNKDSQIWKNVKPFIDWLQTAESESEEE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0040 444 CDD W2_eIF5 293 442 - -
Lan9g0040 444 SMART 542_3 352 440 IPR003307 GO:0005515
Lan9g0040 444 MobiDBLite consensus disorder prediction 268 293 - -
Lan9g0040 444 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lan9g0040 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 444 IPR045196 GO:0003743|GO:0006413
Lan9g0040 444 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Lan9g0040 444 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lan9g0040 444 Gene3D - 105 145 - -
Lan9g0040 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 444 - -
Lan9g0040 444 Gene3D - 3 104 - -
Lan9g0040 444 SUPERFAMILY ARM repeat 297 438 IPR016024 -
Lan9g0040 444 ProSiteProfiles W2 domain profile. 287 444 IPR003307 GO:0005515
Lan9g0040 444 Pfam eIF4-gamma/eIF5/eIF2-epsilon 365 444 IPR003307 GO:0005515
Lan9g0040 444 Gene3D - 294 444 - -
Lan9g0040 444 MobiDBLite consensus disorder prediction 204 225 - -
Lan9g0040 444 MobiDBLite consensus disorder prediction 150 238 - -
Lan9g0040 444 MobiDBLite consensus disorder prediction 150 189 - -
Lan9g0040 444 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0040 Lan-Chr9 248390 251343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0040 1 437 Eukaryotic Initiation Factors Gene Family AT1G36730 63.535 7.52e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0040 K03262 - gmx:100777906 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0040 9 248390 251343 Lan2g0053 2 489571 492466 LSH
Lan9g0040 9 248390 251343 Lan8g0031 8 259093 261069 LSH