Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0039 ATGGCCTTGCAGAACATTGGTGCTGGGAATAGTGATGATGCCTTCTATAGGTATAAGATGCCGAAAATGATTACGAAGATTGAGGGAAGAGGTAATGGCATCAAAACAAACATTGTCAATATGGTTGATATTGCGAAGGCGTTGGCGAGACCTGCGGCTTACACAACAAAGTATTTTGGTTGTGAACTCGGAGCTCAATCGAAATTTGATGAGAAAACTGGCACTTCTCATGTTAATGGATCACATGATACTGCAAAACTTGCAGGCCTTCTTGAGAATTTCATTAAGAAATATGTCCAATGCTACGGTTGTGGAAATCCGGAAACTGATGTCTTGATTACCAAGAGTCAAATGATCCAGCTGAAATGCGCTGCTTGCGGTTTTGTCTCCGATGTGGATATGAGAGACAAACTCACTAGCTTTATCATCAAGAACCCTCCTGAAGTGAAGAAAGGATCCAAAGGCAAGAAAGCCATGAGGAGAGCGGAGAAGGAGAGACTGAAGGAAGGCGAAGCTGCGGACGAGGAACTAAAAAAGCTGAAGAAAGAGGTTAAAAAGAAAGTTCCTTCTTCGTCTTCGAAGACTGGAGCTATTAAATCGACCTCTTCGAAGAAGAAAGGAAGTGGCTCCGATGAAGACCGCACACCACCTACTCACAATCAAATCGAGGATAAAGAGATTTCTCATGATGAAGATGATGATGATGACGATGATGATGATGTCCAATGGCTAACAGATACATCGCTAGATGCTGCTCGCCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCTACTAAAGAACCAGAGAAGAAGAAAAAAGCAGCAAGCAAAGCAAGCGGCGATTCTGCGAATGGAAACACGAAGGATAAACTCGCTGTGGAAGTGAAAGCTAGTTTGAAGAAAGGCATTGGTGCAAAAGAATTGCATTCTCATCTGGCTGCACTTCCAGGATCTGCTCAAGAAAAGATGAGTGTTCTGTTTGAGGCCCTATTCGAGGGAGTCGAGAAAGGTTTTGCGAAAGAAGCGATTAAGAAGAAAAGCTACCTTGCTGTTGCAGTTGCCGAGGATGAGGGATCGCAATCGTTATTGCTTCGCGCTATTGAAGAATTTTGTTGCAAGTCTAGTTCCAATGCATTGAAGGAAGTTGCCCTGGTTTTGAAAGCACTCTACGATGTCGATGTCCTGGAGGAAGAGCCGATAGTGCAGTGGTATTCAAAAGGATTGAAGGGTGATAAAAAGGACTCTCAACTTTGGAAGAATGTTAAACCATTCATTGATTGGCTTCAGAGTGCTGAATCAGAAACAGAAGAAGAATGA 1338 0.432 MALQNIGAGNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETDVLITKSQMIQLKCAACGFVSDVDMRDKLTSFIIKNPPEVKKGSKGKKAMRRAEKERLKEGEAADEELKKLKKEVKKKVPSSSSKTGAIKSTSSKKKGSGSDEDRTPPTHNQIEDKEISHDEDDDDDDDDDVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTKEPEKKKKAASKASGDSANGNTKDKLAVEVKASLKKGIGAKELHSHLAALPGSAQEKMSVLFEALFEGVEKGFAKEAIKKKSYLAVAVAEDEGSQSLLLRAIEEFCCKSSSNALKEVALVLKALYDVDVLEEEPIVQWYSKGLKGDKKDSQLWKNVKPFIDWLQSAESETEEE* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0039 445 ProSiteProfiles W2 domain profile. 284 445 IPR003307 GO:0005515
Lan9g0039 445 SUPERFAMILY ARM repeat 303 439 IPR016024 -
Lan9g0039 445 MobiDBLite consensus disorder prediction 227 242 - -
Lan9g0039 445 MobiDBLite consensus disorder prediction 205 226 - -
Lan9g0039 445 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lan9g0039 445 MobiDBLite consensus disorder prediction 146 242 - -
Lan9g0039 445 MobiDBLite consensus disorder prediction 190 204 - -
Lan9g0039 445 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lan9g0039 445 SMART 542_3 353 441 IPR003307 GO:0005515
Lan9g0039 445 Gene3D - 105 145 - -
Lan9g0039 445 Gene3D - 292 445 - -
Lan9g0039 445 Coils Coil 167 187 - -
Lan9g0039 445 CDD W2_eIF5 293 443 - -
Lan9g0039 445 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 445 IPR045196 GO:0003743|GO:0006413
Lan9g0039 445 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 445 - -
Lan9g0039 445 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Lan9g0039 445 MobiDBLite consensus disorder prediction 149 189 - -
Lan9g0039 445 Gene3D - 3 104 - -
Lan9g0039 445 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Lan9g0039 445 MobiDBLite consensus disorder prediction 272 293 - -
Lan9g0039 445 Pfam eIF4-gamma/eIF5/eIF2-epsilon 367 445 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0039 Lan-Chr9 242629 244424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0039 1 438 Eukaryotic Initiation Factors Gene Family AT1G36730 61.556 6.86e-179 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0039 K03262 - gmx:100777906 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0039 9 242629 244424 Lan2g0052 2 486313 488230 LSH