Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1952 ATGGCTTTTCTCCTCCTTATGATGTATTTGCTTTCTTCTCTATTTCCAATCATCATAAATTCACTTTCAACTATTTCCATTTCTGAAATTTCTTCCAACCAAACATTTATCTGTGCCTTACAACATCCAAACCAACAAGGACAATCAAATCTTAACTGCACTACCTTCCCTCAATCTCATGATATTATTGGACTTCAACTCATTCCCAATAATATTTCATATTCTCAGACTGTAGGTGGCAATGGTTTTATATGTGCATTAAGACCATCTTTTTCTTATTATTATTCTATTTGGTCGGTCATGGAATGTTGGAGATTCTCTAACACCAACTCTTCTACTAATGTTCCCTATAAGCGTATCTACCAGGGACCTGTTATCCAAACTATTAATGCTGGGAATTCTCATGTTTGTGGCCTTGTAAGCGGGAACCTTGAGTGTTGGCAATGGCCTCACTTCAATTCAAGTAAGGCCATTGCTAACATAAACATGTCAAGTATTGCAGTGGGAGCAAACTTTGTATGTGGCTTAACAGCAAAAACAGGGAACATTGCATGCAGTAGTGATAGTAATAATAATAGTAATTCTAGAGTTGTTGATCATGCACCTAATGGAAACTATACTGTTATTGAAGCTGGGTTTTGGCATGCTTGTGCTATATCATTGTATGGTAGATTGGATTGCTGGGGACACATGGATATGACTGGTGACAAAGAGAAACAACCACAAGGGAGGTTCATTTCCTTGGCCTTAGGAGAGAATCGAAGTTGTGCACTTAGGGAGAATGGAACTGTTGCTTGTTGGGGCTCAAATAATTTCACCACGCCACTCAGGTTGCAAGCCACTTTTTTTGAATCAATTGTTGCAAAGAGAAACGTTTTCTGTGGAGTTGTGTCTTCTAATTATTCCTTGTTGTGTTGGGGAACTGAGTTTTTTGAGTCAAATACCAAGGTGTTTGATAATGTCCTCCCAGGACCTTGTAGGAATGAGAATGAATGCAATTGCGGACTTCTATCAGATTCTGCCAAACTCTGTTACTCTCCAAACATCATTTGCAAGCCTTGTCTGCCTGTAGTTGAATCTCCATTTCAGCCACCACCACCATCTTGGACTAGTCCTAGTCCTAGTCTAAGTCCAAGTCCACCCTATAAAAGTGGTTGGAGCAAGAAAATGGTGGCATATCTAGTGGTTGGATGTGTTGGTTGTAGTTCCTTGTTGCTAGTCTTGGCCTTCTTTCTTTACAGGCACTGGAAATGCAGAGTATGCCGTGTCCATGATTCCGGGCGATTGGATGAGTCAGGAAACTCATCAATAGAACCAGAAGCTGTCATTGCTGCAGTTCTAGAGAAGCGGTTAAGTCATGTCATTAGCATGGGAAATGGAAAGCATTTGGAGGAATATTCATTTGATGTGCTGCTTGAAGTCACCAACAACTTCTCAAAGGAGAGAAAAATTGGGATAGGTAGCTTTGGTTCAGTGTATCATGCCACACTAGAAGATGGGAAGGAAGTTGCCATAAAAAGAGCAGAGTTTCCGTTCACCTCTCCATCTTATTATGCAGTGTTGGGTGCCACCAAACGCCAAGAAGAGAAAGATAATGCCTTTGTGAATGAGCTTGAATCTCTATCAAGACTTCACCACAAGAACCTAGTCCGATTATTAGGTTTCTACGAAGACACGAATGAGCGCATTTTAGTGTACGAGTACATGAAAAATGGTAGTCTAAATGATCATCTTCACAAGCTCCACAAAAATTCAGGTTTGGTGTCATGGGGTGGTCGAATCCAGGTAGCTTTGGATGCAGCTAGAGGCATAGAGTACCTTCACCAATATGCCACTCCACCTATCATTCATCGCGACATAAAGTCATCAAACATATTATTGGATGCCAATTGGACAGCCAAAGTGTCTGATTTTGGACTATCACTGATGGGTCCTGAAGATGAGGACTCGCACCTTTCACTCCTAGCAGCTGGCACGGTGGGCTACATGGACCCTGAGTACTATAGGCTTCAACATTTGACCACAAAGAGTGATGTGTACAGCTTTGGTGTGGTTTTGCTAGAAATGTTATCTGGACACAAAGCCATAGATAAAAATGAGAATGGGGTGCCAAGAAATGTGGTAGATTTCATTGTACCTTATATTGTTCAAGATGAAATTCATAGGGTGTTGGACATAAGAGTGGCACCACCAACACCATACGAGATAGAAGCAGTGGCGTTTGTGGGTTATTTGGCAGCAGATTGTGTGAGTCTAGAAGGTAGGAATAGACCAACAATGACTCAAGTTGTAAATAACTTGGAAAATGCATTGGCAGCATGTTTAGCCCAACCAACACTACCAACCTCAACCACCGCTACTTCTTTAGACTAG 2373 0.413 MAFLLLMMYLLSSLFPIIINSLSTISISEISSNQTFICALQHPNQQGQSNLNCTTFPQSHDIIGLQLIPNNISYSQTVGGNGFICALRPSFSYYYSIWSVMECWRFSNTNSSTNVPYKRIYQGPVIQTINAGNSHVCGLVSGNLECWQWPHFNSSKAIANINMSSIAVGANFVCGLTAKTGNIACSSDSNNNSNSRVVDHAPNGNYTVIEAGFWHACAISLYGRLDCWGHMDMTGDKEKQPQGRFISLALGENRSCALRENGTVACWGSNNFTTPLRLQATFFESIVAKRNVFCGVVSSNYSLLCWGTEFFESNTKVFDNVLPGPCRNENECNCGLLSDSAKLCYSPNIICKPCLPVVESPFQPPPPSWTSPSPSLSPSPPYKSGWSKKMVAYLVVGCVGCSSLLLVLAFFLYRHWKCRVCRVHDSGRLDESGNSSIEPEAVIAAVLEKRLSHVISMGNGKHLEEYSFDVLLEVTNNFSKERKIGIGSFGSVYHATLEDGKEVAIKRAEFPFTSPSYYAVLGATKRQEEKDNAFVNELESLSRLHHKNLVRLLGFYEDTNERILVYEYMKNGSLNDHLHKLHKNSGLVSWGGRIQVALDAARGIEYLHQYATPPIIHRDIKSSNILLDANWTAKVSDFGLSLMGPEDEDSHLSLLAAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLEMLSGHKAIDKNENGVPRNVVDFIVPYIVQDEIHRVLDIRVAPPTPYEIEAVAFVGYLAADCVSLEGRNRPTMTQVVNNLENALAACLAQPTLPTSTTATSLD* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1952 790 Pfam Regulator of chromosome condensation (RCC1) repeat 246 272 - -
Lan8g1952 790 ProSiteProfiles Protein kinase domain profile. 478 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1952 790 ProSitePatterns Protein kinases ATP-binding region signature. 484 506 IPR017441 GO:0005524
Lan8g1952 790 Gene3D Transferase(Phosphotransferase) domain 1 569 777 - -
Lan8g1952 790 SUPERFAMILY RCC1/BLIP-II 117 309 IPR009091 -
Lan8g1952 790 Gene3D Phosphorylase Kinase; domain 1 452 568 - -
Lan8g1952 790 SUPERFAMILY Protein kinase-like (PK-like) 456 767 IPR011009 -
Lan8g1952 790 PANTHER OJ000114_01.11 PROTEIN 3 776 - -
Lan8g1952 790 Pfam Protein kinase domain 478 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1952 790 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 3 776 IPR044815 GO:0004674
Lan8g1952 790 SMART serkin_6 478 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1952 790 CDD STKc_IRAK 484 769 - -
Lan8g1952 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Lan8g1952 790 Gene3D - 73 334 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1952 Lan-Chr8 25459157 25461686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1952 21 788 Receptor kinase-like Gene Family AT5G47850 49.936 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lan8g1952 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1952 - - pvu:PHAVU_011G003100g 979.163