Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1950 ATGACTCCAATTAATTTGGCAGGGCAGTTTGGTGACACCACATACACAAAAGTATTTGTTGGAGGGTTGGCTTGGGAGACTCAGAAAGAGACTATGAACAAGTATTTTGAGCAGTTCGGTGAGATCTTGGAGGCCGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGATGCTGCCATGAGAGCTTGTGTGGATGCTTCTCCCGTAATCGATGGCCGTAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTACAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGTGGTAGGAACTTTAGGGTAATGGGTTCTTTCCAGACAGGGTTTGGAGGTGGAGGAGTGGGGTCAGCTTTTGCTTCAGCAGCAACTTTCCCTCATTATGCCATCCAGCAAGGGATGCCTTATAATCTTTATGGGTATTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATAGTGTGTATGGAGGAGCAACAGGAGGAGGAGGAGGACAGTACCCAGTTTATGGAAGTGGAGGAATGATGACGGGTGGTGGTGGTGGTGGTGGTGGTGGTGCAGCATTCTACCCATATGTTCAGTACGGTGGAGATGGGAATGGCGGTGGTTATGGTGCTGTGAACTACCAGCCACACCTATTTCAGTATTCTCATATTGCTGCTGCTGCTGCTGCTTCAACTGCTGCACATGGTGGTTACGCTCAGCACTATGCAACACCCATCTCTCTTCCACCTTCCCCTGCAATACAATCAGGCGTGACAATGGCTCTTCAACCTCTAATACCTCATCGCTAG 837 0.4863 MTPINLAGQFGDTTYTKVFVGGLAWETQKETMNKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGGGVGSAFASAATFPHYAIQQGMPYNLYGYSPYSPDYTYPTSYYSVYGGATGGGGGQYPVYGSGGMMTGGGGGGGGGAAFYPYVQYGGDGNGGGYGAVNYQPHLFQYSHIAAAAAASTAAHGGYAQHYATPISLPPSPAIQSGVTMALQPLIPHR* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1950 278 Gene3D - 11 130 IPR012677 -
Lan8g1950 278 PANTHER OS01G0876800 PROTEIN 1 272 - -
Lan8g1950 278 PANTHER BOULE-RELATED 1 272 IPR037366 GO:0003729
Lan8g1950 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Lan8g1950 278 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lan8g1950 278 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Lan8g1950 278 CDD RRM_RBM24_RBM38_like 16 91 - -
Lan8g1950 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1950 Lan-Chr8 25448272 25454061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1950 12 92 C2H2 Transcription Factor Family AT2G19380 41.975 6.31e-13 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1950 8 25448272 25454061 Lan13g0018 13 96561 101930 LSH