Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1936 ATGGCATTTCATGTAGCTTGTCCAATTACATGTCGCCGAATCTGTTTCTGCGCTTTAGGGTTTCCGACCTCTCTTCACAACAATGCCTTTCTCAATCATGTCACCGCTCTTCGTCAATTCCTCGCCGCTGATACTCCCACTAATATCGACACCGTCCAGGTCGCCGTCCCCAAGGTCTTACCACCACCACCGCCTCCACCGAATCTGCCACCGGATGGAGCTCCACCTTGCGCTGATGCTTTGGATGAGTCCGCATCGATGAAAGCCAAACGTGTCGCTCTACAGAGAAAAGGCGCCGCCGCTATGCTTGCTGCCGAGGAGTTTGCTCGCCAGTTAGAGTCCGGTGCCGGTGACTTTGCCGATACATCAGGAAATATTAATGGAGAAGAACCGGCTCAATCTAACGTGAAAGTTTTTTGTCGAATGTGCAATCGGGTTGAAAATGATGGAAGCGAGACAGCAAAAAAGATGCTATCATGTAAAAGTTGTAGTAAGAAATACCATAGGAACTGCTTGAGAAGTTGGGCTCATAATAGAGATTTATTTCATTGGAGTTCATGGACCTGTCGCGCTTGCCGAATTTGTGAGGCTTGCAGAAGGACCGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGGTGTGATGGCGCTTACCATTGTTATTGTCTTCAACCGCCTCACAAGAATGTTAGTACTGGCCTCTATCTGTGCCCAAAGCACACAAGGTGTCACAGTTGCGGATCGAATGTCCCTGGAAATGGACTGAGTGTGAGGTGGTTTCTGGGATACACCTGCTGTGATGCATGTGGAAGATTGTTTGTGAAAGGAAACTACTGCCCTGTTTGTTTGAAGGTTTACAGAGATTCAGAGTCGACACCAATGGTTTGCTGTGATGTTTGCCAGCGCTGGGTGCATATCCATTGTGATAATATTAGTGATGAAAAATATCATCAATTTCAAGTGGATGGGAATCTGCAGTATAAATGTCCCACATGTCGTGGGGAATGTCATCAGGTCCAGGGTCTTGATGAAGCTGTTCAAGAGCTTTGGAGGAGAAGGAATATTGACGATAGAGATTTAATTGCCAGCTTGAGGGCTGCAGCTGGTTTACCAACTCAAGATGAAATATTTTCTATTTCACCATTTTCAGACGATGAGGATATTGGCAAGCCTTTAAAATTAAAGAGTGATTCTGGGCGTTCCTATAAGTTCTCTCTAAAGAATTTGTCCAATCACACACCAAAGAAGAAAGATTATGGAAAGAAATCTTCAAGCAAAAAGACTGCTAAGAAAAAGGACTCTCAGTCATTTGTGTCTGGTAAAATTGACACACGCCGTAGTTGTGAAGGGCATAGTGATACCAGATCCTTACATAGTTTGGACGATGATGATATACAATCCCTGAGAAATGATGGTCATGATGTTTATTCATCACCTGCTGAAATATCTTGCCCTACCAATCAGCCAGGGGTTTCAAAACATAAATTTGTTGATGAGGTGATGGTCAGTGATGAAGAGAGGAAGCCCAGAGTTGTTCGAATTAAAGGCAATAAGACACATATTATGAATGGCAAAGAGGAGAGTGAAAAACATGATGATAAAACTCAGAATGTGAAAGGGAAGAAGTTGGTTATAAATTTGGGTGCACGGAAAATTAATGTAGCTAGTTCTCCGTGCTCTGATACTTCAAGCTGCCAAAGAGATCAAGATCTGGTTAATGTTAATGGAAATGAATACATAAGCCAGTTGAGGAAGGGAGACAAATTTGCATTAGACAGACAAGGTGCTGCAGCTAGACATATTGATGGTAAAGGAAACAGAGTTGACTTTGGCCAAGCAAAGTTTTTAGGTAGAGGGAATATTTCTGATGGAAGTTTAGAGCGTACTCATGCCTTGCGGAGCAAATATAGTACTGATGGAATATTTGATCAAGTAGGAACAGTAAAAGCTACTTCAAGAGGTGAAGGAAAGTATGGGGAGAGAGATGGAAATAATCATAATAATAATAATCTTGCACCTTCACAATATTTGCCGAAAGATTCTAAACCTCTACTGAGATTTAAATTGAAGAAACCAAGCCTTGAAAGTCTAAATTCTCCTCATCAGGAGGAGGAGAAGACTATAATCAAGGGCCAGAGATCGAAAAGGAAGAGACCAACACCTTTTAAGGAGAAAATGTTGTTTAATGAGACTGAAAATGTAAGCCAGTCACATCAAGACAGTCAAATGGATGAGATCATGGCTGCAAACTGGATATTGATGAAATTGGGTAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAGGGAGTGGTGTCGGACACAGTGGAAGGCACCTCAAAGATACATGTTACCTTAGATGGTGGAAAGGTGAAGATGCTGGAACTCAGGAATCAGGGGGTCCGTTTTATTCCACAAAAGCAGAAGCGATCAAAGACATGA 2463 0.4247 MAFHVACPITCRRICFCALGFPTSLHNNAFLNHVTALRQFLAADTPTNIDTVQVAVPKVLPPPPPPPNLPPDGAPPCADALDESASMKAKRVALQRKGAAAMLAAEEFARQLESGAGDFADTSGNINGEEPAQSNVKVFCRMCNRVENDGSETAKKMLSCKSCSKKYHRNCLRSWAHNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGLYLCPKHTRCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHIHCDNISDEKYHQFQVDGNLQYKCPTCRGECHQVQGLDEAVQELWRRRNIDDRDLIASLRAAAGLPTQDEIFSISPFSDDEDIGKPLKLKSDSGRSYKFSLKNLSNHTPKKKDYGKKSSSKKTAKKKDSQSFVSGKIDTRRSCEGHSDTRSLHSLDDDDIQSLRNDGHDVYSSPAEISCPTNQPGVSKHKFVDEVMVSDEERKPRVVRIKGNKTHIMNGKEESEKHDDKTQNVKGKKLVINLGARKINVASSPCSDTSSCQRDQDLVNVNGNEYISQLRKGDKFALDRQGAAARHIDGKGNRVDFGQAKFLGRGNISDGSLERTHALRSKYSTDGIFDQVGTVKATSRGEGKYGERDGNNHNNNNLAPSQYLPKDSKPLLRFKLKKPSLESLNSPHQEEEKTIIKGQRSKRKRPTPFKEKMLFNETENVSQSHQDSQMDEIMAANWILMKLGNDAIGKRVEVHQTSDNSWHKGVVSDTVEGTSKIHVTLDGGKVKMLELRNQGVRFIPQKQKRSKT* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1936 820 MobiDBLite consensus disorder prediction 696 710 - -
Lan8g1936 820 SUPERFAMILY FYVE/PHD zinc finger 276 334 IPR011011 -
Lan8g1936 820 ProSiteProfiles Zinc finger PHD-type profile. 275 334 IPR019787 -
Lan8g1936 820 MobiDBLite consensus disorder prediction 647 677 - -
Lan8g1936 820 SMART PHD_3 277 332 IPR001965 -
Lan8g1936 820 SMART PHD_3 139 193 IPR001965 -
Lan8g1936 820 SMART PHD_3 194 240 IPR001965 -
Lan8g1936 820 PANTHER PHD FINGER FAMILY PROTEIN 2 814 - -
Lan8g1936 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 334 IPR013083 -
Lan8g1936 820 ProSitePatterns Zinc finger PHD-type signature. 140 192 IPR019786 -
Lan8g1936 820 PANTHER HISTONE ACETYLTRANSFERASE 2 814 - -
Lan8g1936 820 ProSiteProfiles Zinc finger PHD-type profile. 137 195 IPR019787 -
Lan8g1936 820 MobiDBLite consensus disorder prediction 404 489 - -
Lan8g1936 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 249 IPR013083 -
Lan8g1936 820 SUPERFAMILY FYVE/PHD zinc finger 184 245 IPR011011 -
Lan8g1936 820 SUPERFAMILY FYVE/PHD zinc finger 129 194 IPR011011 -
Lan8g1936 820 CDD PHD_SF 139 192 - -
Lan8g1936 820 Pfam PHD-finger 277 332 IPR019787 -
Lan8g1936 820 MobiDBLite consensus disorder prediction 691 720 - -
Lan8g1936 820 MobiDBLite consensus disorder prediction 428 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1936 Lan-Chr8 25381481 25390492 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan8g1936 PHD 1.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1936 - - gmx:100815407 1178.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1936 8 25381481 25390492 Lan13g0040 13 204672 211011 LSH