Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1902 ATGGGAATCCACGAAGAAAGCGAAACCAGACACAAAATACCACCTGCATTTTCCATCCACCGACGTTTCTTTCTCAACCCCATCCAAATTGGTATGTACCCATTAACAATCTCCATACAAAGTTTTCATTTTTGTTTTCAATTTTTCATTTTCCATGGATCCTCTAACTTCATCTCTTTTCTAAGCAAAATGATGAGGCTTCAGACATATGCTGGCCTTAGTTTGATTGCAACTCTGGCTGTTACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTTTATCTTGCAACTTCCAAGATCAGTTTGGTGCTTGTTCTCAACATGGGTCTGGTCATCATGTGTGTTCTATGGCAGTTAACCAAATTGATTTTCCTTGGTTCCCTTCGAGAGGCCGAGATTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTGTGGAAATCCTCTTTGCAATTACTATCTTTAGACAGGACTTTTCTGTTTCATTTCTTGCAATGGTCACAACACTTTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGACTCGAGTACATAGAGACCACTCCTTCAGTGACCAAGTTGTCCCATGTTAGAATTGTATCTTTTATGGGTTTCCTTTTTCTTCTAGATATCATCTTTTTGTATAGTTCAGTGAAGCATTTGATACTAACTTGGCAGCCTTCAGTTTCACTTTTCTTTGCTTTTGAGTACGTGATACTTGCAACAACTACAGCGTCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGATGGGCAATGGGAAAAGAAACCGGTCTACACCTTTTACCTCGAACTTATTAAGGATTTGCTTCACTTGTCCATGTACCTGTGCTTTTTTCTTGTAATTTTCATAAACTATGGAGTTCCTTTGCACTTAATAAGGGAGCTTTACGAGACATTTAGGAACTTCAAAATTCGAGTTGCGGATTACCTACGATATCGTAAGATTACTTCAAACATGAATGACCGCTTTCCTGATGCCACACCTGACGAGCTTAATGCAAGTGATGCAACCTGCATTATTTGTCGTGAAGAGATGACTACTGCAAAGAAGCTTATATGTGGGCATCTTTTTCATGTTCATTGCCTGCGATCATGGCTGGAACGACAGCATACCTGTCCTACTTGCAGAGCAATGGTTGTACCAGCCGAAAATGGGACAACTTCTGCTGGAGGGCTGCAAGCTTCGCAGTCAGATGCTCATCGACATGGGACAGGCGCTGGAAGCACAGCTCAAGCTGAAGTTGGCAATGGAGTGGCAACTGATAATTTGAATCGGCATCAAGCGAGACTCCAAGCTGCCGCTGCAGCAGCTTCTATGTATGAGAAGTCTTATGTTTACCCCTCTGCAACTTCTTTAGCACGTTCTCAAGGGTACACTCAGTATCCTCCAGTTCAAAGACCTGTGCCTGAATCTTCAAGTGCTGAGCTTAATAGAGAAATAGCATCCAATAGTAAACAAGCACAAACACACTATGTTATCCCTGATGGACCAATGAATGTATCTTCTCCTCCAATGGGAAATTTTGATTCTCTGGTGGAAGCTCAAAGAAAACTTCTTCAATTACAGATTGAGATTCTGCAAAATCAGCTCCAACTTTTGCAGAAGACAAATGTTGACAAAAGTGTGGATGAAGGTATATCAGTATCAGATAGCAGAGGCAAAGGCATAGCTTCTTCATTTGTCTCTAACCATGAGGAGATTTAG 1755 0.4091 MGIHEESETRHKIPPAFSIHRRFFLNPIQIGMYPLTISIQSFHFCFQFFIFHGSSNFISFLSKMMRLQTYAGLSLIATLAVTYHAFNSRGQFYPAMVYLATSKISLVLVLNMGLVIMCVLWQLTKLIFLGSLREAEIERLNEQSWREVVEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRLEYIETTPSVTKLSHVRIVSFMGFLFLLDIIFLYSSVKHLILTWQPSVSLFFAFEYVILATTTASIFVKYIFYVSDMLMDGQWEKKPVYTFYLELIKDLLHLSMYLCFFLVIFINYGVPLHLIRELYETFRNFKIRVADYLRYRKITSNMNDRFPDATPDELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRAMVVPAENGTTSAGGLQASQSDAHRHGTGAGSTAQAEVGNGVATDNLNRHQARLQAAAAAASMYEKSYVYPSATSLARSQGYTQYPPVQRPVPESSSAELNREIASNSKQAQTHYVIPDGPMNVSSPPMGNFDSLVEAQRKLLQLQIEILQNQLQLLQKTNVDKSVDEGISVSDSRGKGIASSFVSNHEEI* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1902 584 CDD RING-H2_synoviolin 352 393 - -
Lan8g1902 584 Pfam Ring finger domain 354 393 IPR001841 -
Lan8g1902 584 Coils Coil 528 553 - -
Lan8g1902 584 MobiDBLite consensus disorder prediction 403 428 - -
Lan8g1902 584 PANTHER - 64 518 - -
Lan8g1902 584 ProSiteProfiles Zinc finger RING-type profile. 355 393 IPR001841 -
Lan8g1902 584 SMART ring_2 355 392 IPR001841 -
Lan8g1902 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 402 IPR013083 -
Lan8g1902 584 SUPERFAMILY RING/U-box 335 399 - -
Lan8g1902 584 PANTHER RING ZINC FINGER PROTEIN 64 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1902 Lan-Chr8 25182610 25188288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1902 64 576 C3H Transcription Factor Family AT3G16090 64.854 0.0 660