Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1889 ATGGAAATAGAGCAAGACCATGGTTCCAATGGCAATAGCAGTGTTACAAATATAGATTATGAAATGAGAATAAGAGATAATAATAATAAGAAAGGAGTGATGTATCATCTTGTGTGGGAAGATTTAAGTGTTGTGGTTCCAAATTTTGGGAATGAACACACAAAGAGGTTGCTTAATGGGTTAAGTGGGTATGCAGAACCTAATAGAATCATGGCTATTATGGGTCCTTCTGGTTCTGGAAAATCTACTCTTCTTGATGCTTTAGCAGGTAGACTCTCCAGAAATGTTATAATGTCTGGAAAGGTGCTTATAAATGGAAAGAAAAGAAGATTACAATGTGGGGGTGTAGCTTATGTGACCCAAGAAGATATATTGTTGGGAACACTAACAGTTAGAGAGACAATTTCATACTCAGCTAATCTAAGGCTTCCAGCAACCATGACCAAAGAAGAGATAAATGACATTGTAGAGGGAACAATTATGGAGATGGGTCTTCAAGATTGTGCTGATAGGATTTTAGGAAATTGGCACTTAAGAGGTATAAGTGGTGGAGAAAAGAAAAGACTAAGCATAGCACTTGAAATTCTCACAAGACCTAACCTCTTGTTCCTTGATGAACCCACCAGTGGTCTTGATAGTGCTTCAGCATATTTTGTTGTACAAACTTTGAGAAACATAGCCCATGATGGCAAGACTATTATCTCTTCTATACATCAACCAAGTAGTGAAGTTTTTGCACTCTTTGATGATCTCTTTCTTCTCTCTGGGGGTCAAACCATATACATTGGACCAGCTGAAAGTGCAGTTCAGTTCTTTGCCAATGCAGGATTCCCTTGTCCAAGTAGAAGAAACCCTTCAGATCATTTCCTACGTTGTATTAATTCAGACTTTGACACTGTCACAACAACTATGATGGCCTCCCACAAAATGCATGATCCAAAATCAACAGCATCATTGATGAACTTAAAAACTGAAGAAATCAAAGTAAAACTCATTGAGAAATACAGATGGTCAGAATATGCAACAGCTGCAAGGGCAAGAATCAAAGAAATCTCAAATATTGAAGGACATGATGCTGAAAGTAAAAGCAAGAGCCAAGCCAAATGGTGGAAGCAACTATCAACATTGACTAAGAGATCTTTCGTGAACATGTGCAGAGACGTAGGGTACTATTGGATAAGGGTAACAATCTATATTGCCTTATCTCTGTGTGTTGGTACAGTCTTCTTTGAAGTTGGAACAAGTTATAGTGCAATTTTTGCAAGAGGGGCATGTGGCGCTTTTATTTCAGGTTTCATGACATTCATGTCTATAGGAGGCTTCCCATCTTTCATAGAAGAAATGAAGGTATTTTACAAAGAAAGGATTAATGGGCACTATGGAATTGCAGTGTACATAGTGTCAAATTTTCTATCTTCCTTTCCCTTTGTGGCAATGATGTCCATTGCTACTGGCACTATAACCTATTATATGGTTAAGTTTCGTCCTGAGTTCTCACATCTTATGTATATCTGTCTTGATCTTATCGGCTGCATCGCCATTGTCGAGAGCTCCATGATGATTATAGCTTCACTAGTTCCCAACTTCCTCATGGGATTGATAATTGGAGCAGGATATATTGGTGTAATGATGATGACTGCTGGCTATTTCCGTCAGATCCACGATCTTCCGAAAATCTTCTGGCGCTACCCGATTTCATACATCAATTTTAGTGCATGGGGATTGCAGGGAGCTTTCAAGAATGACATGATTGGTCTGAAGTTTGATCCATTAATACCTGGTGGCCCAAAACTTGAAGGAGAAATAATCCTCACAACCATGCTTGGTATGAGAGTTGATTATTCAAAATGGTGGGATTTAGCTGCAGTCATAATCATCCTCATATTGGTTAGAGTTCTGTTCTTTTTTGTTCTCAAATTTAAGGAGAAAGCTTCACCTTTACTTCACAGTATCTATGCAAAACAAGCTCTTCAATGCATGAACAAGCGACCTTCATTCAGGAAAGTTCCACCATCTAATTTCACTTCCAAGAGGCACCAATCATTGCATCCCATGTCTTCTCAAGAGGGTCTCAACTCCCCTATTCATTAG 2091 0.3874 MEIEQDHGSNGNSSVTNIDYEMRIRDNNNKKGVMYHLVWEDLSVVVPNFGNEHTKRLLNGLSGYAEPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGKVLINGKKRRLQCGGVAYVTQEDILLGTLTVRETISYSANLRLPATMTKEEINDIVEGTIMEMGLQDCADRILGNWHLRGISGGEKKRLSIALEILTRPNLLFLDEPTSGLDSASAYFVVQTLRNIAHDGKTIISSIHQPSSEVFALFDDLFLLSGGQTIYIGPAESAVQFFANAGFPCPSRRNPSDHFLRCINSDFDTVTTTMMASHKMHDPKSTASLMNLKTEEIKVKLIEKYRWSEYATAARARIKEISNIEGHDAESKSKSQAKWWKQLSTLTKRSFVNMCRDVGYYWIRVTIYIALSLCVGTVFFEVGTSYSAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERINGHYGIAVYIVSNFLSSFPFVAMMSIATGTITYYMVKFRPEFSHLMYICLDLIGCIAIVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRQIHDLPKIFWRYPISYINFSAWGLQGAFKNDMIGLKFDPLIPGGPKLEGEIILTTMLGMRVDYSKWWDLAAVIIILILVRVLFFFVLKFKEKASPLLHSIYAKQALQCMNKRPSFRKVPPSNFTSKRHQSLHPMSSQEGLNSPIH* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1889 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 275 IPR027417 -
Lan8g1889 696 MobiDBLite consensus disorder prediction 668 696 - -
Lan8g1889 696 Pfam ABC-2 type transporter 238 295 IPR043926 GO:0140359
Lan8g1889 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 281 IPR003439 GO:0005524
Lan8g1889 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 34 691 - -
Lan8g1889 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 34 691 - -
Lan8g1889 696 SMART AAA_5 67 266 IPR003593 -
Lan8g1889 696 CDD ABCG_EPDR 37 263 - -
Lan8g1889 696 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524
Lan8g1889 696 Gene3D - 24 276 IPR027417 -
Lan8g1889 696 Pfam ABC transporter 58 209 IPR003439 GO:0005524
Lan8g1889 696 MobiDBLite consensus disorder prediction 667 696 - -
Lan8g1889 696 Pfam ABC-2 type transporter 372 581 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1889 Lan-Chr8 25117306 25124304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1889 2 239 Acyl Lipid Metabolism Gene Families AT1G54350 31.365 5.41e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1889 K05681 - gmx:100806806 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0055 7 267592 272497 Lan8g1889 8 25117306 25124304 LSH
Lan8g1889 8 25117306 25124304 Lan13g0106 13 620964 626339 LSH