Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1881 ATGGAGTCTGATTCTGAGAATTTGAATTCACTCGACGCGCCTCCCATATCGGAAAAATCTCAACCGGAGGAGCTTCATGACCGCAAGCCTCGTCTCGGCCGCAAACCTAAGAAACGCCGTCGTTTTCATCAGGATAATGAAACCGGAGCAAGTTCAGGTAATTTTACTACTGATAACAATTTAGTGGTTGAGGATAGTGAATTTAAGGGGATTTTGGAAGGGGATGGTTCTGCTGGTGTTAATTCGGGAGTGTGCGGTGAATTAGGTTCTGAATTTGATAGAAGGTTAGGTTTGGGAAATGTGAACTCAAATGGGAGTGAAGTAATTGAAGTAGGGGTAATTACGTGTGAGGAGAGTTTGGATCATAAGAGTGTGGTAGCTAATGGGAATTTGCTTGATTTGAATGCTAGGATTAATTTGAATCTGAATGAAGGGTGTAGTTCACCTTTTAATAACGTTGAGGAGGATGGTAGTTTGAAGAGTAGGGATTCAATTGATTTGAATTTGGATGTGGATAATGAGGAGGATGGTGTGGATCGGAGTGTGTGTTTGGGGCGTTCGGGAGGGAAAATGTTGACAGAGGATTGTAAGATTGATTTGAATGTGGATGTAGGTGAAGAAAAGGGTGATGGTGTTGATGGGAATGGACGTCCCGAGTTGGATGCTTTGTTTGATAAGATCGAGCAGAGTGGTGATATTAATCAGAAATCTACGGAAGGTGATGACGTGTATGTTAATTTGAATGATGTCTCCAATGCTAACAAGTCTGATGCCATTCATGTGTCCATGGAACATGCAGCTTTAGGTGCTGCCACATGTTTAATTGAGGAAAAGGAAGGTGATGATGTCAATGGAGACACGACAGCTATTGACTCTCTCCAGGTTACAAATGTAGTTTCTGCTAAGGATTGTGATTACATGGAGGTTCAACAAATTGATAACAGTCCTTCTGAATTCCAACGAAGTAGCCAGAGGAAGAGAAGAAAAGTATTAGATAATGGAAAATCCACAACAGAGACAATTTTAAGGAGGAGTTCTCGCCAGGCATCGGCTAGAAAGCAGGTTTCAGGCACCACAGCATTGCAGGAGATGTATGATCCTTTGTTGTCTGTGGTACCCAGTTCCTTAACAGAAGAGAAACCTGTAAACTTTGGTGATGAGAAATATGAGCAGTGCAATGTTCCTCCACTGAAGTTGCAATTACCCCCTTCTTCTCAAAATTTGAATTTAGATGATGTTCCTGTTCTTGAACTTTTTTCTATTTATGCTTTTTTAAGATCTTTTAGTACTTTTTTATTTTTGAGTCCATTCGAATTGGAGGATCTTGTTGCCGCAGTGAAGTCTGAAACCTCCAGTATGTTATTCGACAGCATTCATGTTTCTATTTTGCACACTTTGAGATTGCATTTGGAATATCTTTCCAGTGAGGGTTGCCAATCTGCAGCCGATTGCTTGAGGAATCTTAACTGGGATTTCTTGGACTTGGTCACATGGCCCATTTTCATGGCCGAGTACCTTCTGATTCATGCCTCAGGATTTAAAACTGCTTTTGATCTTAACCACTTAATGTTCAGAACTGACTACTGCAAACAACCTGCAAATGTGAAGGTTAAGATACTGCAGTACCTTTGTGATGATATGATTGAAGTGGAAGCCACAAGGTCGGAGCTTAACAGAAGATCTTTGGCAAAAGAGGCTGATATGGGCTTTGATCAGCATATGTATTTTGACACTTTTAAGAAAAGAAGAGCTGTAATGGATATTTCTGGTGGTTCTTGTTTGACTGAGGAGATTGTGGATGATACAACTGACTGGAACAGTGATGAGTGCTGCCTCTGTAAGATGGATGGAAGTTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTGGGAATTGCAAGTGACAATCTGCCCGAAGGTGACTGGTATTGCCCCGAGTGTGCAATTGGGCCACACAGGGCTTGGACGAAATCTCATAAGTCACTTCGAGGAGCAGACTTGTTGGGGATTGATCATCATGGCCGTCTTTTTTTTAACAGCTGTGGTTACCTGTTAGTGTCAGACTCATCTGGTACAGATTCCTTGTTCAGTTATTACCACAAAAATGATATACATGTTGTAGTTGAAGTTCTAAAGTCTATGGGTACTTTGTATGGAAGCATATTAATGTCTATTTATGAACATTGGGATATCCCTGCTAACTTAAGTGTGGGGACTAGTAACTTGGTAGTCTTTAATCAAAGTTCCTGCAAAAACGTGCATATGAGCGGAAAGTATTATGCTAGTTTAGACACTAATCTGGCTGATGATCAAAGAAAGTTGGATGAAAATTCAACTGCTGACTGTTCTACTCATCCTGGCCAAGAGTTTCCAAAAGCTGGGACCCTCTTAGATTCAATGACTACTATAGAAAGTCCTTGTGTTGCTTCAGAAGGGTCAGCTGATACCACACAAATGAGATCAGGGATTGAGAATGTTCAAATGCCTGGACTTTATGGTTCCACTAGATCCAATGAATCCTTGAATCAGTCTGGAATACCCGAAAAACATCATCCAGTTGGTGATTGTTCTTTGACATCTTCCAGCTTAGATGTAGGGCATAAAATAAACTTAAGTTCTGTGGGTGCTAGCTGTACCCCCTCCACTGAAAATAAGGATACTTCAGAAGTGCCTTTTGGAATTAACTACGTAAACTACTACAGCTTTGCCCGAACAGCCGCATTAGTTGCACAAGAGTTGATGTGTAAGTCACGTGAAAAGATTAATAAGAATTATGCAATGTCTGATGAGGACATAATTTCGGAACAAGGAAAGGCCATTATAAAGAAATCTTCAAATTTTTGTTGGCCAAGCATTCAAAACCTGAATGCTGCTGCTGAAAAGGAAAAATGTGGGTGGTGCTTTTATTGCAAAGCTGCTAATGATGACAGGGATTGCTTGTTTAATGATGTGACAAAGTCTGTCCGGGAAGTGTCGAATGATACTTTAGTTGGGCTTCAATCCAGGAAGATCCAGAATGGACATCTTACAGCTATCATATGTCATGTTGTTTCCCTTGAGGACCGATTACGTGGGCTTTTGTTAGGTCCATGGTTGGATCCTCATCAAACCAATCTTTGGCATAAGGAGCTTATGAAGACATCTGATATTCTTCCTGTTAAACGATTATTGCTCCTTTTAGAATCCAATTTGCGGCATTTTGCACTCTCGGCAGATTGGTTTAAGCATGCAGATTCAGTTACTACCATGGGATCATCTACTCATATCGTGGTCAGTTCATCACGCACATCTTCAAGGCATGGTATTCCAAGGAAAAGAGCTAGGTATTCAGATATCGGGTCTAATTCATCTTCAACGACTACTAGTGGTTTGGGATTATTTTGGTGGAGAGGTGGGAGCCTTTCTCAACAATTGTTTAATTGGAAGTATTTGCCTCGCTCCTTGGTTGCCAAGGCTGCTAGACAAGCTGGGTATACAAAGATACCAGACATTCTCTATCCTGAGAATTCAGATTTTGCAAGAAGAAGCAAATGTGTAGCCTGGCGAGCTGCTGTTGAAAGGTCAACAAGTGTTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCTAACATAAAGTGGCATGATATTGAGAATAGCCATCCTCAATATCTGCTGGACAAGGAATCTAAAAAGTCAATCAGGCTTTTCAAAAAAGTAATTGTACGCAGGAAGTGCAGTGAAGGGCAATCTGTGAAATATCTTCTTGATTTTGGGGGGAAGAGAAGGTCCATACCAGATATCGTTGTCAAACATGGTTCTTTGTTGGAAGAACCCTCAAGTGAGAGGAAAAAATATTGGCTAGATGAATCATATCTTCCCTTGCATCTTTTGAAGAATTTTGAGGAAAAAAGAATTGTCCGAAAGTCCACTGAAAAGAAACATGGAAAACTTATTGAGATTGGTAGAGTAAATAAGAGGATTCCTCGGGAAAGTGTTTTTTCATATTTGTTCTCTAAAATGGAGAAATCTGATTGTCAACAGTGTGGCCACTGCAACAAAGACGTTCTAATCAGGGAAGCTGTGAGCTGCCTTCATTGCAAAGGGTATTTCCATAAGAGGCATGCCAGGAGATCTGGTGGTACAAGGACTACTGGATTCACTTACTCATGTCACAGATGCCAAGATGGGATGTGTGTAAAGACTAATAATACTAACAGAAGGAAAGATCACGCAAAGCTGCAGAAGATTCAATCACAGAAATGTAAAAATGTTCCCTCACTTTGTAAATCAGTAAACCTTAAAGGTAATAAAAAGACATTGAGTAAGGTGCGGCAGGTAAGATCTCAAACCAATAAGAAGATCCCACCAAGTTTACCTCTTCGCCGTTCTGCTAGGAATGTCAAGTCCTTGTATCTGCAACATCAAATGAATGGAGGTAATAAAAAAGGAATACATGGTAAAAAAAATGTAGGGCGCAAAAAAAGGAAGCAAAGTAAATCCAAGAAGCTGACCTCTCAGAAGTCCGAGGCAACTACTGTTCAACTCAAGAATTTGGCAGTAACTACAGAGCGCAAGAAAAGAACGAACATCTGTACCAGTTACTGGCTTAATGGTCTTTGGTTGTCTAGAAAGCCAAATGATGAGCGAGTAATGCTGTTTAGGGAGAAAAAGCATGTTGTCTTCTCTGAAGATTTTCCTGGCACCCTTGACCATTATAAATGCCGCCTTTGCTGTCAAGATGGATGTACTTCAAATTATATTGCTTGTGGAACATGTGGAGATTGGTATCACGGTGATGCTTTTGGACTTACTCTTGACAATGCCAGACAACTTATTGGATTTAGGTGCCATGTTTGTCGTGATAGGGCTGCTCCCGTCTGCCCTCATATTATTAATGCATTGCCTCACACTGAAAGTAATGCGGCAACTGAGTGTGCAGAGGAGTCATCTAAGCCTATTTCTCTCTTACCTTTGAGTGAGGTTTCATGA 4983 0.4086 MESDSENLNSLDAPPISEKSQPEELHDRKPRLGRKPKKRRRFHQDNETGASSGNFTTDNNLVVEDSEFKGILEGDGSAGVNSGVCGELGSEFDRRLGLGNVNSNGSEVIEVGVITCEESLDHKSVVANGNLLDLNARINLNLNEGCSSPFNNVEEDGSLKSRDSIDLNLDVDNEEDGVDRSVCLGRSGGKMLTEDCKIDLNVDVGEEKGDGVDGNGRPELDALFDKIEQSGDINQKSTEGDDVYVNLNDVSNANKSDAIHVSMEHAALGAATCLIEEKEGDDVNGDTTAIDSLQVTNVVSAKDCDYMEVQQIDNSPSEFQRSSQRKRRKVLDNGKSTTETILRRSSRQASARKQVSGTTALQEMYDPLLSVVPSSLTEEKPVNFGDEKYEQCNVPPLKLQLPPSSQNLNLDDVPVLELFSIYAFLRSFSTFLFLSPFELEDLVAAVKSETSSMLFDSIHVSILHTLRLHLEYLSSEGCQSAADCLRNLNWDFLDLVTWPIFMAEYLLIHASGFKTAFDLNHLMFRTDYCKQPANVKVKILQYLCDDMIEVEATRSELNRRSLAKEADMGFDQHMYFDTFKKRRAVMDISGGSCLTEEIVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDNLPEGDWYCPECAIGPHRAWTKSHKSLRGADLLGIDHHGRLFFNSCGYLLVSDSSGTDSLFSYYHKNDIHVVVEVLKSMGTLYGSILMSIYEHWDIPANLSVGTSNLVVFNQSSCKNVHMSGKYYASLDTNLADDQRKLDENSTADCSTHPGQEFPKAGTLLDSMTTIESPCVASEGSADTTQMRSGIENVQMPGLYGSTRSNESLNQSGIPEKHHPVGDCSLTSSSLDVGHKINLSSVGASCTPSTENKDTSEVPFGINYVNYYSFARTAALVAQELMCKSREKINKNYAMSDEDIISEQGKAIIKKSSNFCWPSIQNLNAAAEKEKCGWCFYCKAANDDRDCLFNDVTKSVREVSNDTLVGLQSRKIQNGHLTAIICHVVSLEDRLRGLLLGPWLDPHQTNLWHKELMKTSDILPVKRLLLLLESNLRHFALSADWFKHADSVTTMGSSTHIVVSSSRTSSRHGIPRKRARYSDIGSNSSSTTTSGLGLFWWRGGSLSQQLFNWKYLPRSLVAKAARQAGYTKIPDILYPENSDFARRSKCVAWRAAVERSTSVEQLALQVRELYSNIKWHDIENSHPQYLLDKESKKSIRLFKKVIVRRKCSEGQSVKYLLDFGGKRRSIPDIVVKHGSLLEEPSSERKKYWLDESYLPLHLLKNFEEKRIVRKSTEKKHGKLIEIGRVNKRIPRESVFSYLFSKMEKSDCQQCGHCNKDVLIREAVSCLHCKGYFHKRHARRSGGTRTTGFTYSCHRCQDGMCVKTNNTNRRKDHAKLQKIQSQKCKNVPSLCKSVNLKGNKKTLSKVRQVRSQTNKKIPPSLPLRRSARNVKSLYLQHQMNGGNKKGIHGKKNVGRKKRKQSKSKKLTSQKSEATTVQLKNLAVTTERKKRTNICTSYWLNGLWLSRKPNDERVMLFREKKHVVFSEDFPGTLDHYKCRLCCQDGCTSNYIACGTCGDWYHGDAFGLTLDNARQLIGFRCHVCRDRAAPVCPHIINALPHTESNAATECAEESSKPISLLPLSEVS* 1661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1881 1660 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 5 1632 - -
Lan8g1881 1660 Pfam PHD-finger 610 652 IPR019787 -
Lan8g1881 1660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1566 1624 IPR013083 -
Lan8g1881 1660 SUPERFAMILY FYVE/PHD zinc finger 593 652 IPR011011 -
Lan8g1881 1660 MobiDBLite consensus disorder prediction 1 16 - -
Lan8g1881 1660 Pfam DDT domain 416 467 IPR018501 -
Lan8g1881 1660 SUPERFAMILY FYVE/PHD zinc finger 1569 1624 IPR011011 -
Lan8g1881 1660 MobiDBLite consensus disorder prediction 1483 1499 - -
Lan8g1881 1660 PANTHER PHD FINGER FAMILY PROTEIN 5 1632 - -
Lan8g1881 1660 CDD PHD1_AIRE 609 651 - -
Lan8g1881 1660 SMART testlast3 412 472 IPR018501 -
Lan8g1881 1660 ProSiteProfiles DDT domain profile. 412 472 IPR018501 -
Lan8g1881 1660 MobiDBLite consensus disorder prediction 320 334 - -
Lan8g1881 1660 ProSitePatterns Zinc finger PHD-type signature. 610 651 IPR019786 -
Lan8g1881 1660 ProSiteProfiles Zinc finger PHD-type profile. 607 654 IPR019787 -
Lan8g1881 1660 MobiDBLite consensus disorder prediction 1 59 - -
Lan8g1881 1660 MobiDBLite consensus disorder prediction 314 358 - -
Lan8g1881 1660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 668 IPR013083 -
Lan8g1881 1660 MobiDBLite consensus disorder prediction 1473 1506 - -
Lan8g1881 1660 MobiDBLite consensus disorder prediction 335 358 - -
Lan8g1881 1660 SMART PHD_3 1345 1392 IPR001965 -
Lan8g1881 1660 SMART PHD_3 609 652 IPR001965 -
Lan8g1881 1660 SMART PHD_3 1571 1618 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1881 Lan-Chr8 25062531 25078010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1881 19 1628 PHD Transcription Factor Family AT5G12400 39.636 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lan8g1881 DDT 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1881 - - lang:109353160 2438.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0060 7 305212 318854 Lan8g1881 8 25062531 25078010 LSH