Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1880 ATGTCATTTTCACCTAGCTTAGGATCTCCACAACCCTTGTTGCTTAGAGAAGTGAAATTCGAGGAAAGGGGTTTATGCTTGATCCATTTGTTGCTCAATCTTGCAAATCATGTTGCTAATGGTAATATTGAAAATGCAAATATCATATTTGAGCAAATTTCCCTGCTTGCCTCTCCTGCTGGAGATACTATGCAACGGATTGCAGCATATTTCAGCGAAGCACTTGCCGATCGGATTCTTAAATCGTGGCCTGGGATCCATAAAGCCGTCAATTCAACTAGAATGACAATGATTTCCGAGGAAATTCTTGTTCACAAGCTGTTCTATGAGCTTTTCCCTTTCTTGAAGGTAGCATTTGTTTTGACAAATCAAGCTATACTTGAAGCAATGAAAGGGGAAAAAATGATTCATATAATTGATCTCAATGCTGCTGAACCTGCTCAGTGGATCGCTCTCTTCCAAGCTTTGAGTGCTCGCCCCGAAGGCCCTCCTCATTTGAGAATTACCGGTGTCCATTGGAAGAAAGAGATTCTGGATCAGGTAGCTCATAAGCTGATTGAAGAAGCCGAAAAGTTGGATATCCCATTCCAATTCAATCCTATAGTCAGCAAATTAGAAAATCTTGATTTCAATAAACTTCGCGTAAAAACTGGTGAAGCACTAGCAATAAGTTCTATTCTCCAATTACATTCCTTTCTGGCCTTGGACAATGAGGCCATGCAGAGAAAATCTCCTCTTTTGTTAAACAGCACCAATAGAGTTCACCTGCACAGAGTTCTGCCTATGAGCCAAAGTACATTTCGTGATTTGTTCGAGAAAGATATAGCTAATAGTTATACTGCTAGTCCTGACTCAACTTCATCATCACCATTACCTTTAATTGCTTCAAATTCAATGAATATGGAGAAGTTTCTTAATGCCTTAAGAAGGTTAATACCAAAGATCATGATTGTAACAGAGCAAGACTCTAATCATAATGGGTTGTCCCTGATGGAGCGGCTGCTGGAAGCACTATATACTTATGCAGCATTATTCGATTGCTTGGAATCCACTGTCTCGAGAACATCATTGGAGAGATTAAGGGTAGAGAAGATGCTTTTCGGGGAGGAAATCAAGAACATCGTCGCATGTGAGGGATCCGAAAGAAAGGAAAGACATGAAAAGCTGGATAAGTGGTTCCAGAGATTCGATTTAGCCGGGTTTAGTAATGTGCCATTAAGCTATCTTGGCATGTTGCAAGCAAGTAGGTTCCTTCAAAGCAATGGTTGTGAGGGATATAGGATGAGGGAGGAAAATGGTTGTGTACTAATTTGTTGGCAGGATAGGTCCTTGTTTTCGATATCTGCTTGGAGATCTATGAAGTAA 1365 0.4044 MSFSPSLGSPQPLLLREVKFEERGLCLIHLLLNLANHVANGNIENANIIFEQISLLASPAGDTMQRIAAYFSEALADRILKSWPGIHKAVNSTRMTMISEEILVHKLFYELFPFLKVAFVLTNQAILEAMKGEKMIHIIDLNAAEPAQWIALFQALSARPEGPPHLRITGVHWKKEILDQVAHKLIEEAEKLDIPFQFNPIVSKLENLDFNKLRVKTGEALAISSILQLHSFLALDNEAMQRKSPLLLNSTNRVHLHRVLPMSQSTFRDLFEKDIANSYTASPDSTSSSPLPLIASNSMNMEKFLNALRRLIPKIMIVTEQDSNHNGLSLMERLLEALYTYAALFDCLESTVSRTSLERLRVEKMLFGEEIKNIVACEGSERKERHEKLDKWFQRFDLAGFSNVPLSYLGMLQASRFLQSNGCEGYRMREENGCVLICWQDRSLFSISAWRSMK* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1880 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 453 IPR005202 -
Lan8g1880 454 Pfam GRAS domain family 27 451 IPR005202 -
Lan8g1880 454 ProSiteProfiles GRAS family profile. 18 451 IPR005202 -
Lan8g1880 454 PANTHER SCARECROW-LIKE PROTEIN 3 1 453 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1880 Lan-Chr8 25054984 25057212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1880 7 454 GRAS Transcription Factor Family AT1G50420 63.938 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lan8g1880 GRAS 9e-134 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1880 - - gmx:100814131 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1880 8 25054984 25057212 Lan13g0114 13 666141 668403 LSH