Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1858 ATGGGCAAGTCTAGCAAGAAATCTGCTACCAAAGTTGATGCTGCACCAGCTGTAGTTGCTCCTTCCAAGTCTGCCAAAAAGGGCAAGAGGCAGCCTGAAGATGAAATTGAGAAGCAGCTGAGTGCAAAGAAGCAGAAGATAGAGGAGGTTGCCCAGAAACAAAAGAAGGAAGCTAAGCTTCAAAAGAAGGAAAGTAGTTCAGACGATTCTTCATCAGAATCTGAAGATGAGAAACCTGCTGTGAAAGCTGTTGCTGCTTCAAAGAAGCAACCTGCTGCTGTGAAATCAAAGGTTCAGAAGAAGGAAAGTAGTTCTGACGATTCTTCAGAATCTGAAGATGAGGCCCCAAAGCCAAAGGTTGCTGTTGCTGGTAAGAATGGATCTGCCCCGTCAAAGAAAAATGTTGAGTCGGGTGAAAGTTCTGAGGACACCGATGATGACAGTACCGACGATGACAATGCAACTGAAGCTGCCAAGAAATTGCCTGCTTCTGCTGTTAAGAAGGCTGAGTCAGACTCAACTGCTGTTAGCACAGATGATGATGAGTCCTCGGATAGCGATGGTGATGATAAAAAGAAAAATGTTAAAGCTGCTAATGGTAACAATAAACCAGCACCTGTCACGAAGACGGTGAAAAAGGAGTCTGATAGCTCATCTGATGATGATGAGCCTGAGAAAGACTCAAAAGAAAGTTCTGATGATGGTTCAGAGAGTTCAGAGGACTCAGAGGAGGAAAATGAGAAAAAACCCTCCCAAACTCCTCTGAAAAGCGTTAAGGATGTGGAGATGGTTGATGCCTCATCGGAGAAGAAAGCTCCTAAAACCCCGTCCACCCCAAATGCAGAAAATGGTGGATCAAAGACACTATTTATTGGCAACCTGTCATTTAGTGTGCAACGTTCTGATATTGAAAATTTCTTCAAAGATGCTGGAGAAGTCGTTGATGTTCGTCTAGCCATAGATGATGATGGGAGATTTAAAGGGTTTGGACATGTTGAGTTTGCCACATCAGAGGCAGCCAAAACCGCCCTTGAATTGCATGATCAAGAACTGTTGAACCGTCCTGTCCGCCTTGATTTAGCTCGTGAAAGGGGCGCATATACCCCTAACAGTGGTCCCAACAGCGGTAACTTTAATAATTCCCAGAGTGGTGGAAGAGGCCAATCCCAGACGGTCTTTGTGAAGGGTTTTGATAGATCTCTGGGAGAAGAAGAGATAAAATCTAGCCTGGAGGATCATTTTGGTACTTGTGGGCAGATTACCAGGATATCTATTCCCAAAGATTATGATTCTGGTGAAAGTAAAGGGTTTGCTTACTTGGACTTCAAAGATGGTGATAGCTTGAGCAAAGCTCTAGAACTCCACGAATCTGACCTTGGAGGTTATACACTTTCGGTGGATGAAGCCAAACCTAGAGACAATCAAGGTTCTGGTGGTGGTAGGGGTGGCCGATTCGGTGGTAGGAGTGGTGGAAGAGGGGGTGGTGGATTTGGTGGAAGGGACAGTGGTGGCAGATTTGGTGGTGGAAGAGGGGGTGGTGGTCGTTTTAGTGGTGGAAGAGGTGGTGGTGGTCGATTTGGTGGTGGTGGTCGCGGTCGTGGAGGACCAAGTAGACCAAGCTATGCTGCCGAAGGGAAGAAGACCACCTTTGGTGATGACTAG 1662 0.4615 MGKSSKKSATKVDAAPAVVAPSKSAKKGKRQPEDEIEKQLSAKKQKIEEVAQKQKKEAKLQKKESSSDDSSSESEDEKPAVKAVAASKKQPAAVKSKVQKKESSSDDSSESEDEAPKPKVAVAGKNGSAPSKKNVESGESSEDTDDDSTDDDNATEAAKKLPASAVKKAESDSTAVSTDDDESSDSDGDDKKKNVKAANGNNKPAPVTKTVKKESDSSSDDDEPEKDSKESSDDGSESSEDSEEENEKKPSQTPLKSVKDVEMVDASSEKKAPKTPSTPNAENGGSKTLFIGNLSFSVQRSDIENFFKDAGEVVDVRLAIDDDGRFKGFGHVEFATSEAAKTALELHDQELLNRPVRLDLARERGAYTPNSGPNSGNFNNSQSGGRGQSQTVFVKGFDRSLGEEEIKSSLEDHFGTCGQITRISIPKDYDSGESKGFAYLDFKDGDSLSKALELHESDLGGYTLSVDEAKPRDNQGSGGGRGGRFGGRSGGRGGGGFGGRDSGGRFGGGRGGGGRFSGGRGGGGRFGGGGRGRGGPSRPSYAAEGKKTTFGDD* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1858 553 MobiDBLite consensus disorder prediction 209 235 - -
Lan8g1858 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 390 471 IPR000504 GO:0003723
Lan8g1858 553 MobiDBLite consensus disorder prediction 1 286 - -
Lan8g1858 553 Gene3D - 379 507 IPR012677 -
Lan8g1858 553 MobiDBLite consensus disorder prediction 271 286 - -
Lan8g1858 553 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 90 548 - -
Lan8g1858 553 MobiDBLite consensus disorder prediction 26 83 - -
Lan8g1858 553 Coils Coil 33 64 - -
Lan8g1858 553 MobiDBLite consensus disorder prediction 368 389 - -
Lan8g1858 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 392 464 IPR000504 GO:0003723
Lan8g1858 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 356 IPR000504 GO:0003723
Lan8g1858 553 MobiDBLite consensus disorder prediction 365 389 - -
Lan8g1858 553 SMART rrm1_1 391 467 IPR000504 GO:0003723
Lan8g1858 553 SMART rrm1_1 288 359 IPR000504 GO:0003723
Lan8g1858 553 SUPERFAMILY RNA-binding domain, RBD 277 388 IPR035979 GO:0003676
Lan8g1858 553 MobiDBLite consensus disorder prediction 95 119 - -
Lan8g1858 553 SUPERFAMILY RNA-binding domain, RBD 389 502 IPR035979 GO:0003676
Lan8g1858 553 CDD RRM1_NUCLs 288 364 IPR034349 -
Lan8g1858 553 MobiDBLite consensus disorder prediction 463 553 - -
Lan8g1858 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 363 IPR000504 GO:0003723
Lan8g1858 553 PANTHER BNAA08G02930D PROTEIN 90 548 - -
Lan8g1858 553 Gene3D - 209 377 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1858 Lan-Chr8 24901522 24906925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1858 279 453 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 2.25e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1858 K11294 - gmx:100786132 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1858 8 24901522 24906925 Lan13g0144 13 834870 840156 LSH