Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1849 ATGTCGCGTCAAACGACGACGTCTGCTTTCACCAAATCCAAAACCCTCGACAACAAATATATGCTGGGAGATGAGATTGGGAAGGGAGCCTATGGTCGAGTTTTCAAAGGTTTGGACCTAGAGAATGGAGACTTCGTTGCAATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACGTCATCATGCAAGAGATTGATTTGTTAAAGAATTTGAATCACAAAAACATTGTAAAGTATCTTGGATCCTTAAAGACAAAGAGTCATCTGCACATAATTTTGGAGTATGTTGAGAATGGCTCGCTTGCAAATATTATCAAGCCCAATAAATTTGGACCATTTCCAGAATCATTGGTTGCAGTTTATATTGGCCAGGTGTTGGAAGGCTTGGTTTATCTACATGAACAGGGTGTTATCCATCGGGATATTAAGGGTGCTAACATATTGACAACTAAAGAGGGTCTAGTCAAACTTGCTGATTTTGGTGTTGCAACAAAGTTAACAGAGGCTGATGTTAATACTCATTCAGTTGTTGGAACACCATATTGGATGGCCCCAGAGGTTATAGAAATGTCTGGTGTGTGTGCTGCTTCTGACATTTGGAGTGTTGGCTGTACGGTTATTGAACTTCTTACATGTGTGCCTCCTTACTATGATTTGCAGCATATGCCAGCTCTTTTCCGTATTGTCCAGGATGAGCATCCTCCAATTCCTGATAGCTTGTCACCTGACATCACTGATTTTCTGCACCATTGCTTTCAAAAGGATGCTAGACAAAGACCTGATGCTAAAACACTACTGTCGCACCCCTGGATCCAAAACTGTAGACTGAGTGATACTACCTATATTGATTCAATTGACAATTAG 873 0.4066 MSRQTTTSAFTKSKTLDNKYMLGDEIGKGAYGRVFKGLDLENGDFVAIKQVSLENIAQEDLNVIMQEIDLLKNLNHKNIVKYLGSLKTKSHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIGQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQHMPALFRIVQDEHPPIPDSLSPDITDFLHHCFQKDARQRPDAKTLLSHPWIQNCRLSDTTYIDSIDN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1849 290 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Lan8g1849 290 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Lan8g1849 290 PRINTS Tyrosine kinase catalytic domain signature 181 191 IPR001245 GO:0004672|GO:0006468
Lan8g1849 290 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Lan8g1849 290 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Lan8g1849 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Lan8g1849 290 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1849 290 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Lan8g1849 290 PANTHER MAP3K EPSILON PROTEIN KINASE 1 6 278 - -
Lan8g1849 290 PIRSF ILK 2 271 - -
Lan8g1849 290 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1849 290 CDD STKc_Cdc7_like 19 274 - -
Lan8g1849 290 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1849 290 Gene3D Transferase(Phosphotransferase) domain 1 17 289 - -
Lan8g1849 290 SUPERFAMILY Protein kinase-like (PK-like) 17 282 IPR011009 -
Lan8g1849 290 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 6 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1849 Lan-Chr8 24827822 24861011 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1849 1 278 MAP Kinase Kinase Kinase AT3G13530 92.446 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Lan8g1849 Pkinase 6.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1849 - - lang:109355519 567