Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1843 ATGAGCTCTCGGGCAGGCAGGGGGCCTGTCAGAAGTTATCGGCGGAGGAAGACAGTTTTGAACATTGACCTTAACCATGTGCCATCTGGTGACAGTCGGGAACAGGAGGGACCTTCAACTGTGTTGGTGCCTCAACAAGTTCAAGCTATCCAGCAACCTCAGGCTGTACAAGGACCCCCAACTCATTTGGGGACTGGACAAGTTCACGCTGTCCAGCAACCACCAGCTGTACAACCTCCAACGATTGATGTGGAGGCCTTTGATGATGATGTTATTGAGTCTTCCCCAAGGGCTTTTGCTGAGGCTAAAAATAAAAACAATTCGAGGAGAAACCGCAGGAGGACTATTGTTGATGTGGATTTAGACGATCAGGCTAGGGTAACCGACAATAATTCCAACAAACGCAACAGAGTCTCCCTAGGCCAACCAATTATTAACTGTGATCTTTATATAAACCTGGAAGGCAGTAGCAGTCTTGAGAGGGAAATTATGCCACCACCTGAACCTCCAAAAGAGCCTGTTTTCAATTGTCCAATATGCATTGGCCCTTTGGTAGAAGAAGTATCAACAAAGTGTGGTCACATTTTTTGCAAGGCTTGCATCAAGGCTGCAATAAGTGCTCAGAGCAAATGCCCTACATGCAGAAAGAAGATTACTGCGAGATCCCTTATAAGGGTGTTTCTCCCATCAACTAGCTGA 699 0.4664 MSSRAGRGPVRSYRRRKTVLNIDLNHVPSGDSREQEGPSTVLVPQQVQAIQQPQAVQGPPTHLGTGQVHAVQQPPAVQPPTIDVEAFDDDVIESSPRAFAEAKNKNNSRRNRRRTIVDVDLDDQARVTDNNSNKRNRVSLGQPIINCDLYINLEGSSSLEREIMPPPEPPKEPVFNCPICIGPLVEEVSTKCGHIFCKACIKAAISAQSKCPTCRKKITARSLIRVFLPSTS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1843 232 PANTHER ELFLESS, ISOFORM B 9 232 - -
Lan8g1843 232 ProSitePatterns Zinc finger RING-type signature. 192 201 IPR017907 -
Lan8g1843 232 SUPERFAMILY RING/U-box 176 220 - -
Lan8g1843 232 SMART ring_2 177 214 IPR001841 -
Lan8g1843 232 MobiDBLite consensus disorder prediction 52 80 - -
Lan8g1843 232 MobiDBLite consensus disorder prediction 52 74 - -
Lan8g1843 232 ProSiteProfiles Zinc finger RING-type profile. 177 215 IPR001841 -
Lan8g1843 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 230 IPR013083 -
Lan8g1843 232 PANTHER RING ZINC FINGER-RELATED 9 232 - -
Lan8g1843 232 Pfam Zinc finger, C3HC4 type (RING finger) 176 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1843 Lan-Chr8 24804166 24808585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1843 11 231 C3H Transcription Factor Family AT5G48655 46.429 1.56e-45 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0092 7 496286 498747 Lan8g1843 8 24804166 24808585 LSH
Lan8g1843 8 24804166 24808585 Lan13g0155 13 939712 944048 LSH