Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1834 ATGGGTTCTGAGAGAGTAACTGGGAAGGTGAAATGGTTCAATGACACCAAGGGTTTCGGTTTCATAACCCCTGATGATGGTGGTGATGAACTCTTCGTTCACCAATCTCACATAAAATCTGATGGATTTCGATCCCTCGCTGAAGGTGAATCTGTTGAGTTTTTGATTGATGCTGATTCTGATGGTCGATCTAAGGCCGTTGATGTAACTGGTCCTGATGGTGTTAATGTCCAGGGTAGTCGACGTGGTGGCGGTGGCGGTGACGGTGGAGGCTATGGCGGTGGAAGAGGTGGTGGAGGCTATGGCGGTGGTGGACGAGGTGGCGGACGTGGGGGAAGAGGAGGTGGAGGATATGGTGATGGAGGTTATGGAGGCGGTGGTGGTGGATACGGTGGAGGAGGTGGTTACGGAGGTGGCGGTGGAGGATGTTACAGCTGTGGTGAGTCAGGTCACATTGCTAGGGAGTGCCCGCAGGGAGGTGGTGGTGGCGGTGGAGGAAGGTATGGAGGTGGTAGCGGTGGCGGTGGTGGCGGCGGAGGTGGCTGCTACAGCTGCGGTGAGTCTGGCCACTTCGCTAGGGATTGTCCTTCCGGAGGTCGTTGA 603 0.5605 MGSERVTGKVKWFNDTKGFGFITPDDGGDELFVHQSHIKSDGFRSLAEGESVEFLIDADSDGRSKAVDVTGPDGVNVQGSRRGGGGGDGGGYGGGRGGGGYGGGGRGGGRGGRGGGGYGDGGYGGGGGGYGGGGGYGGGGGGCYSCGESGHIARECPQGGGGGGGGRYGGGSGGGGGGGGGCYSCGESGHFARDCPSGGR* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1834 200 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lan8g1834 200 PANTHER COLD SHOCK PROTEIN 2 1 110 - -
Lan8g1834 200 PANTHER COLD SHOCK PROTEIN 2 107 199 - -
Lan8g1834 200 SMART csp_8 7 72 IPR011129 GO:0003676
Lan8g1834 200 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lan8g1834 200 Gene3D - 2 83 IPR012340 -
Lan8g1834 200 Gene3D - 139 165 - -
Lan8g1834 200 Gene3D - 178 200 - -
Lan8g1834 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 110 - -
Lan8g1834 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 107 199 - -
Lan8g1834 200 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Lan8g1834 200 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Lan8g1834 200 ProSiteProfiles Zinc finger CCHC-type profile. 182 197 IPR001878 GO:0003676|GO:0008270
Lan8g1834 200 SUPERFAMILY Retrovirus zinc finger-like domains 135 198 IPR036875 GO:0003676|GO:0008270
Lan8g1834 200 MobiDBLite consensus disorder prediction 63 92 - -
Lan8g1834 200 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lan8g1834 200 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Lan8g1834 200 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lan8g1834 200 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lan8g1834 200 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lan8g1834 200 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lan8g1834 200 Pfam Zinc knuckle 181 197 IPR001878 GO:0003676|GO:0008270
Lan8g1834 200 Pfam Zinc knuckle 142 158 IPR001878 GO:0003676|GO:0008270
Lan8g1834 200 ProSiteProfiles Zinc finger CCHC-type profile. 143 158 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1834 Lan-Chr8 24754049 24755040 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lan8g1834 CSD 2.6e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1834 - - cam:101490833 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0103 7 549326 550276 Lan8g1834 8 24754049 24755040 LSH
Lan8g1834 8 24754049 24755040 Lan13g0169 13 1018118 1019151 LSH