Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1810 ATGAAGATACAGTGTGATGTGTGTAACAAGGAGGAAGCTTCTGTGTTTTGTTCTGCAGATAAAGCTGCTCTATGCTATGCCTGTGATATTACAATCCACCATGCCAACAAGCTTGCAAGCAAACACTCACGCTTCTCTCTTCACTACCCAAACTCCAAATACTCTCCTTTATGTGATATATGCCAAGAGAGGCATGCATATGTGTTTTGCCGAGAAGATAGAGCAATATTTTGCATAGAATGTGACCTTTCTATCCATGGAGCCAATGAAAATACACAGAAACATAACAGGTTTCTTCTCACTGGTGTAAAGGTTGGTTTTTCATCTCCAGAAGCAACACCACTACGTTCCAAAAGCACTTCAACTGGCTCAGAAGGAAGAAGCTCTCGTTCTAATACAAACATGGTTAGTGACAAGGGTTCAGTTTCAACAAGCAACATTTCTGAGTACTTGGTTGACACAATATCTGATTACTGCATGGAAGACATTCTTGATGTGTCTTTTGCACCCAATGGTTTCCATAATGTTTGA 531 0.403 MKIQCDVCNKEEASVFCSADKAALCYACDITIHHANKLASKHSRFSLHYPNSKYSPLCDICQERHAYVFCREDRAIFCIECDLSIHGANENTQKHNRFLLTGVKVGFSSPEATPLRSKSTSTGSEGRSSRSNTNMVSDKGSVSTSNISEYLVDTISDYCMEDILDVSFAPNGFHNV* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1810 176 MobiDBLite consensus disorder prediction 110 141 - -
Lan8g1810 176 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Lan8g1810 176 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270
Lan8g1810 176 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lan8g1810 176 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 175 - -
Lan8g1810 176 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lan8g1810 176 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lan8g1810 176 CDD Bbox1_BBX-like 57 100 - -
Lan8g1810 176 Gene3D Classic Zinc Finger 1 100 - -
Lan8g1810 176 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 175 - -
Lan8g1810 176 CDD Bbox1_BBX-like 5 47 - -
Lan8g1810 176 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lan8g1810 176 MobiDBLite consensus disorder prediction 112 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1810 Lan-Chr8 24603008 24604413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1810 1 173 C2C2-CO-like Transcription Factor Family AT1G75540 48.529 2.46e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lan8g1810 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1810 - - lang:109353034 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0130 7 787731 788891 Lan8g1810 8 24603008 24604413 LSH
Lan8g1810 8 24603008 24604413 Lan13g0210 13 1316222 1317977 LSH