Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1791 ATGTTGCACTGTCTCAACACTTCGGGGAATGTAGGAGGAAACTGTTCAGAGATAACAGTGTTGGAAATGCAAAGAGCAAGTAGGAAGTGGCAACAAGAACAACACCAGCTGCATGAGGAGGAGGAGGAGGAGCAACAAGGGTTCTTTTGTGGTGGTGGTGGTGGTGGCGGCGGTGATTCGGCGCTTGTTCACGTGGTTGCTCACTCAGTGAAGCCTGGCCTGGATTTGGAAAATGGGTTGCATAAATTGAGAAACTTTGACATGGGATTAGAGTCTTCTTTATTGCAACATGTTTCTGCTTTTGAGGAGAATTCCTCTATTTCAAGGACTTGTAGTAGAGACATGGTTTCACCAATGGAGAAAAAACAAACCTTCAAAAAGAGAAAATTTGAAAAGACTCAGCATTCCAAGGTTGTAGAAGAAAATGATAACAAGGACAAGAAGATCAAAGTAAGTTGTGATAAAGAGGAATCCAAAATGACAGAACAAACCAGTAAGAAGAACATAAAGCCAAATACAAGTAAAAACAAGGAAAGTGTTGGTGGTGATAGTTCGAAGGAGAAATCGAAAGAGTCCGAGGCTCAAAATCCAAAGCCTGATTACATTCATGTCCGAGCACGTCGTGGTCAAGCCACGGATAGTCATAGCTTGGCTGAAAGAGTGAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCAGGTTGCAGCAAAATTACAGGAAAGGCCGGAATGCTCGATGAAATCATTAACTACGTTCAGTCCCTACAACGACAAGTTGAGTTCTTATCAATGAAATTAGCTGTTATAAACCCAAGGTTTGACTTCAACATTGATGATTTGTTTGCCAAAGAGGTGTTTCATGCTTGTTCTCCAAGTTTCCCAAACATAGAGATGCAATCAGACATGAATATTAACCCTGCTTATCTTCAGTTCAATCCAGCACAGCTTGTTTCATATTGTGGTGGATTAATAAACAACCCTTCAGATATAGCACTTAGAAGGATCACCAGTGCACCGGTATATTTGCCTGAAACGTTTATCGACTCATCATCTTGTTTCACCCAAATTTTACCTTCATCAACTTGTGAAGGTGATTTCCAAAACCTTTACAATAATGTGCCTTTTGATCAAGCTCGAATAGCATCATTTCCTTCTCAACCACTTTCAGGTGTAGTTGACACTAGCAATATAAAGATGGAGATGTAG 1221 0.4038 MLHCLNTSGNVGGNCSEITVLEMQRASRKWQQEQHQLHEEEEEEQQGFFCGGGGGGGGDSALVHVVAHSVKPGLDLENGLHKLRNFDMGLESSLLQHVSAFEENSSISRTCSRDMVSPMEKKQTFKKRKFEKTQHSKVVEENDNKDKKIKVSCDKEESKMTEQTSKKNIKPNTSKNKESVGGDSSKEKSKESEAQNPKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCSKITGKAGMLDEIINYVQSLQRQVEFLSMKLAVINPRFDFNIDDLFAKEVFHACSPSFPNIEMQSDMNINPAYLQFNPAQLVSYCGGLINNPSDIALRRITSAPVYLPETFIDSSSCFTQILPSSTCEGDFQNLYNNVPFDQARIASFPSQPLSGVVDTSNIKMEM* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1791 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 278 IPR036638 GO:0046983
Lan8g1791 406 SMART finulus 216 266 IPR011598 GO:0046983
Lan8g1791 406 MobiDBLite consensus disorder prediction 180 218 - -
Lan8g1791 406 MobiDBLite consensus disorder prediction 165 179 - -
Lan8g1791 406 Gene3D - 207 277 IPR036638 GO:0046983
Lan8g1791 406 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 18 386 IPR024097 GO:0006355
Lan8g1791 406 CDD bHLH_AtBPE_like 200 285 - -
Lan8g1791 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 260 IPR011598 GO:0046983
Lan8g1791 406 MobiDBLite consensus disorder prediction 105 218 - -
Lan8g1791 406 Coils Coil 23 43 - -
Lan8g1791 406 Pfam Helix-loop-helix DNA-binding domain 214 261 IPR011598 GO:0046983
Lan8g1791 406 MobiDBLite consensus disorder prediction 115 164 - -
Lan8g1791 406 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 18 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1791 Lan-Chr8 24490985 24494049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1791 8 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 39.753 2.55e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g1791 HLH 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1791 - - gmx:100794256 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0149 7 907755 910896 Lan8g1791 8 24490985 24494049 LSH
Lan8g1791 8 24490985 24494049 Lan13g0233 13 1436082 1439328 LSH