Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1788 ATGGCTTCTGCTGATGTTGAGTTCCGTTGCTTCGTTGGTGGGCTTGCATGGGCCACCGATAGCGAAGCTCTTGAGAAGGCTTTCTCCCAATACGGAGAAATCCTTGATTCGAAGATTATCAACGATCGTGAAACTGGAAGGTCCAGGGGTTTCGGATTCGTTACCTTCTCATCTGAGCAATCAATGAAGGACGCGATCGAGGGTTTGAATGGCCAGGATCTTGATGGACGTAACATCACCGTGAACGAGGCTCAGTCTCGTGGATCTGGTGGTGGTGGTGGTGGCGGCCGTGGAGGAGGTGGTTATGGAGGTGGTGGCGGTGGATTCCGCAGCGGTGGTGGAGGTGGATATGGTGGTGGACGTCGTGAAGGCGGTGGTGGTGGTGGTTACAACAGAAACGGCGGTGGAGGTGGTTATGGTGGTGGTAGTGGTGGTGGTGGCAGAGACCGTGGTTATGGAGGAGGAGATGGTGGGTCCCGCTACTCTCGTGATGGTGAATCTGGTGGCGGTGGCTGGAGGAACTAA 525 0.5543 MASADVEFRCFVGGLAWATDSEALEKAFSQYGEILDSKIINDRETGRSRGFGFVTFSSEQSMKDAIEGLNGQDLDGRNITVNEAQSRGSGGGGGGGRGGGGYGGGGGGFRSGGGGGYGGGRREGGGGGGYNRNGGGGGYGGGSGGGGRDRGYGGGDGGSRYSRDGESGGGGWRN* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1788 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lan8g1788 174 SMART rrm1_1 9 82 IPR000504 GO:0003723
Lan8g1788 174 PANTHER GEO13361P1-RELATED 1 174 - -
Lan8g1788 174 MobiDBLite consensus disorder prediction 70 174 - -
Lan8g1788 174 Gene3D - 2 119 IPR012677 -
Lan8g1788 174 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 174 - -
Lan8g1788 174 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Lan8g1788 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1788 Lan-Chr8 24467485 24468556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1788 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 44.444 9.46e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1788 - K13195 ccaj:109800369 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0150 7 918675 919704 Lan8g1788 8 24467485 24468556 LSH
Lan8g1788 8 24467485 24468556 Lan13g0236 13 1468180 1469294 LSH