Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1777 ATGCCGCACCCTTCTTTCTTCAAGCTTGTTCTACCCTCCACTCTCCAAGCCAATCAAATGAGGATTCCAGATGATTTTCTGAGGAAATACGGGGGTGAGCTTTCTGCAACTGCTACTCTATCTGTTCCCGATGGTACTGTCTGGCACATAGGATTAAAAAATGCTGACAAAAAGTTTTGGTTCCTCGATGGTTGGCCAGAATTTGTTCAACGCTATTCCGTTGGTGTTGGATACTTGTTAGTGTTCACATATGAAGGAAAGTCATCTTTCAATGTTCATATATTTAATTTGGCTACTTCTGAGATAAACTATCAGTCAGCCATACAAACTAGTACCGAAGGGAAATACTTCATAAATTGTCTCAAGTTTTTTGAAGAAATGGAAGATGAAGACTCTGTTGATTTCTTCGATTCACCTTCTCGCATTACTTCTGGTTCTTTGCAAAACAAAGTTTTTCCTGGATCAGTAGATATCAAACCTGGCAAGAGCAATACTCCTCCAGCATTGCAGAATCTATTTAATGGCTCGAAACTTAATAGCATAAACTGGGGAGAGGGTGAGGATACCCTTTCATCGAGAGGTGCCGGTTTACTAGACAGTCGGTTTACCAGGGATATAGGTCTTCAGTTTAATGAAGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTACGTGCTTCTGTTGAGGAAAAGGTTATAAAACCTGTGAGAAAGAAGCGGAAATCAGAAGGCCAGAAACCCTCTATTGAACATGAAGAGGAGACAGAAATGCGCAATAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAACGGGCAATCAATGCAGCAAAAGCTTTTGAACCAGATAATCCTTTCTGCCGGGTTGTCCTGCGACCCTCCTATTTATATAGGGGGTGCATAATGTATTTGCCATCATGCTTTGCAGAAAAACAATTGAATGGAGTTTCAGGATTTATTAAACTTCAAAACTCGGATGGGAGACAGTGGCTGGTTCGGTGCCTTTATAAGGGAGGTAGAGCTAAGTTTAGCCAAGGGTGGTTTGAATTTACATTAGAGAACAATATAGGGGAAGGTGATGTTTGTGTGTTTGAGCTGCTTAGAATGAAGGAGGTAGTGCTCAAAGTTACTATATTTCGTGTCGTTGAGGATGTTGGTTTGTCGAGCCCTCCTTTGCAGCAGAACCAAAATGTGAGCCCACCTAAACTGACGAACACTCTCTTGCAGCATCACCTCACCCCAGTTAAACTTGCTAGAAACTAG 1284 0.412 MPHPSFFKLVLPSTLQANQMRIPDDFLRKYGGELSATATLSVPDGTVWHIGLKNADKKFWFLDGWPEFVQRYSVGVGYLLVFTYEGKSSFNVHIFNLATSEINYQSAIQTSTEGKYFINCLKFFEEMEDEDSVDFFDSPSRITSGSLQNKVFPGSVDIKPGKSNTPPALQNLFNGSKLNSINWGEGEDTLSSRGAGLLDSRFTRDIGLQFNEVEFKRSTEELKLRASVEEKVIKPVRKKRKSEGQKPSIEHEEETEMRNRFYESASARKRTVTAEERERAINAAKAFEPDNPFCRVVLRPSYLYRGCIMYLPSCFAEKQLNGVSGFIKLQNSDGRQWLVRCLYKGGRAKFSQGWFEFTLENNIGEGDVCVFELLRMKEVVLKVTIFRVVEDVGLSSPPLQQNQNVSPPKLTNTLLQHHLTPVKLARN* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1777 427 CDD B3_DNA 292 387 IPR003340 GO:0003677
Lan8g1777 427 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lan8g1777 427 Gene3D - 1 98 IPR015300 -
Lan8g1777 427 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Lan8g1777 427 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Lan8g1777 427 Pfam B3 DNA binding domain 297 387 IPR003340 GO:0003677
Lan8g1777 427 Gene3D - 271 392 IPR015300 -
Lan8g1777 427 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 416 - -
Lan8g1777 427 ProSiteProfiles B3 DNA-binding domain profile. 294 389 IPR003340 GO:0003677
Lan8g1777 427 PANTHER B3 DOMAIN-CONTAINING 1 416 - -
Lan8g1777 427 CDD B3_DNA 4 96 IPR003340 GO:0003677
Lan8g1777 427 SUPERFAMILY DNA-binding pseudobarrel domain 287 387 IPR015300 -
Lan8g1777 427 SMART B3_2 6 98 IPR003340 GO:0003677
Lan8g1777 427 SMART B3_2 294 389 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1777 Lan-Chr8 24393482 24396757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1777 1 393 B3 DNA Binding Superfamily AT3G18990 49.377 1.11e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan8g1777 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1777 - - gmx:100813285 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1777 8 24393482 24396757 Lan13g0269 13 1701308 1704385 LSH