Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1772 ATGGAAGATCCCTTTTTCCTTAAGGGAAAAGAATTTGGGTATTGGACATCTCCTCAGGCTCAAGTGGAGGAGGGACCGCCATCGTTAGACGGTGGAACGAGAAGTTCAATTTCCGAGGATATGCTTAACAATTTCTCCGAGCTCATCAACTTTGATAATTATGCTGGTTGGTGCACTAGTCCATTGATGAATGATCAGAGTTTGACCAATGGTCTTTCATCATTTGCCTCAGCACCATATCCACCACTCAGTGGATTCAATTTAGTTGAACAGAACAATAGTCCATTCTTTATGACAGAAGATAGTGGAAATTCCAATACTATGGAAAACTCCTCTAGTTATGGGGAGAAAGTTGTATTTCAGCCAATGGACACTCAACTTGGTTTCTCAGATTATGCAAATGATACAAGTAACTTAGATTCAAACCAAAACTTCAATGGTTCTTTTCAACAACTTAATACTTTAGATGTAGACAATTACATAACCTCCAAACCATCTGGTTTATCTCTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCCGGTGAAGGAATATTGGCACAAGTTTGGGTACCTAAAAAGCATGGCGATGAACTAATCTTAACCACGAGTGAGCAACCCTATCTGCTAGACCAAATGCTTGCAGGGTATCGCGAAGTGTCAAGGACATTCACATTTTCTGCAGAAAGAAAACCGGGTTCTTTTCCAGGGCTTCCCGGTCGAGTGTTTCTCTCCCAAGTTCCTGAATGGACCTCCCATATTGGTTACTACAATAAATCCGAGTACATGAGGGTGGAGGATGCGATTAATCATGAGGTTCGTGGATCAATTGCTCTTCCCATATCCGATCTGCAGTCTGAATTGCCGTGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCAAGATTTTGACAGAGAGTTGGAAATTGTTTCTCATGCACTTCAGCTTGTAAATTTAAGGACGCCTATGCCTCCACGAGTTCTTCCCCAGTGTCTATCAAATAACAAAAGAGCTGCTTTAACAGAGATAACTGATGTGTTACGAGCTGTGTGTCATGCGCATAAATTGCCATTGGCACTGACATGGATTCCCTGTTGTTACAGCGAGGGAATGAGAGATGGAACGGGGAGAGTACGAATTAAAGAGGGTCATGCAAGTTCTGGTGAGAAATGCATACTATGCATTGAGGAATCAGCTTGCTATATAAATGATAGAATGGTAGGAGGATTTGTTCATGCATGCGTTGAACATTATCTCGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAACCTTCCATTCTTCTACCCTGATGTCAAAGTCTGTGATATTGGTGAATACCCCCTTGTTCATCATGCACGCAAATATAATTTGAATGCTGCAGTCGCAATAAGGCTAAGGAGTATCTATACTAACGATGATGATTACATATTGGAATTCTTCCTGCCTGTCGATATGACTGGGAGTTCAGAACAACAACTTTTATTAGACAATCTCTCAGGTACTATGCAGAGAATTTGTCGGAATTTGAGGACTATCTCAGATGCTGAATTATCAGGAATAGAAGGCCCCCAAGTGGGGTTTGAAAATGAAAAGGTCTCAGGTTTTTTTTCTCTGTCTAGAGAAAATTCCCATTCAACAATGCTAAATGGTGCCCATGATTCAGTCCAGAAGATGTCCTTGAAGGCATCTAACCTGAGAAACAATGGAATTGGAGCTGTTCATAACCAGGCAATGAATCGTTCAAGAAGGCAGGCCGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATATTTTTCTGGTAGTCTTAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAGCATGGTATTTCCAGATGGCCATCCCGCAAGATAAATAAAGTGAATCGATCATTGCAGAAAATACAGATTGTGCTTGATTCGGTGCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTCTACTGGGGGTTTTGTGGCAGGAGGGTCAATCATCCAAGCAATTGATGCACATAAAGGCCTTATGTTCCCTGAGAAATGGACTGTAAAAGACCCCGAGTCTTTAACTAAAGGTGCAGTCTCAGTACTTCCAGCGTCTCGTAGTGAAGATGAGAGTTTGGTGATTAAGTTGGAGGAGGAGGATGTTTCTTTGGAGGGAAATCAGCTTCTGCACTCGAGAAGTGTGCTTATCTCCAATTCCTGTGATGGTGAACTGAAGAAAGACAATGCCTTTTCTTTTGATTGTAATGATTATTCAAAATCAGTGACCGTGGACAACGAATCATACCGAACAACCTGCCCTTGGACCAAGTCTCAGGATTGTCCTGACCAAATCAATCCGGGTTCTTTTCTTGAAAAAGATTCAGGGAGTCTGAATAAAAGTAGCCATGATATTGAGTGTCATAATTCAAGCTCTTTGGTTGCTGATGAGTTGGAAATTGGCGGCGCTGTTGAACATAACCACCCCACTCTTTCAAGCATGACAGACTCATCTAGTGGCTCTGGCTCCACAATGCATGGCAGTTCTTCAAGCTCTCAGATCTCTGAAAACCAGAAACAGTCCAAACGCAAATCGACTTGTGTTGATAGTGAGTCAAAAATTATTGTGAAAGCTACCTATAGAGAAGATACTATCCGTTTCAAGTTTGATCCATCTATAGGTTGTTCACAGCTATATGCTGAAGTTGCAACAAGGTTCAAATTGCAAAATGGTTCATTCCAGCTGAAATATCTAGATGATGAAAAGGAATGGGTGATGTTGGTTAATGACTCAGACTTGCAAGAATGTGTTGAAATAATGGGTGATATCGACACGCGTAGTGTGAAGTTTATCGTTCGCGATATGCCTTGTGTTGTAAGCAACCATGGCAGTAACAATTGCTTATGA 2958 0.4172 MEDPFFLKGKEFGYWTSPQAQVEEGPPSLDGGTRSSISEDMLNNFSELINFDNYAGWCTSPLMNDQSLTNGLSSFASAPYPPLSGFNLVEQNNSPFFMTEDSGNSNTMENSSSYGEKVVFQPMDTQLGFSDYANDTSNLDSNQNFNGSFQQLNTLDVDNYITSKPSGLSLDERMLRALSFFKESAGEGILAQVWVPKKHGDELILTTSEQPYLLDQMLAGYREVSRTFTFSAERKPGSFPGLPGRVFLSQVPEWTSHIGYYNKSEYMRVEDAINHEVRGSIALPISDLQSELPCCAVLELVTTKEKQDFDRELEIVSHALQLVNLRTPMPPRVLPQCLSNNKRAALTEITDVLRAVCHAHKLPLALTWIPCCYSEGMRDGTGRVRIKEGHASSGEKCILCIEESACYINDRMVGGFVHACVEHYLEEGQGIAGKALQSNLPFFYPDVKVCDIGEYPLVHHARKYNLNAAVAIRLRSIYTNDDDYILEFFLPVDMTGSSEQQLLLDNLSGTMQRICRNLRTISDAELSGIEGPQVGFENEKVSGFFSLSRENSHSTMLNGAHDSVQKMSLKASNLRNNGIGAVHNQAMNRSRRQAEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLQKIQIVLDSVQGVEGGLKFDPSTGGFVAGGSIIQAIDAHKGLMFPEKWTVKDPESLTKGAVSVLPASRSEDESLVIKLEEEDVSLEGNQLLHSRSVLISNSCDGELKKDNAFSFDCNDYSKSVTVDNESYRTTCPWTKSQDCPDQINPGSFLEKDSGSLNKSSHDIECHNSSSLVADELEIGGAVEHNHPTLSSMTDSSSGSGSTMHGSSSSSQISENQKQSKRKSTCVDSESKIIVKATYREDTIRFKFDPSIGCSQLYAEVATRFKLQNGSFQLKYLDDEKEWVMLVNDSDLQECVEIMGDIDTRSVKFIVRDMPCVVSNHGSNNCL* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1772 985 Pfam PB1 domain 893 970 IPR000270 GO:0005515
Lan8g1772 985 ProSiteProfiles RWP-RK domain profile. 584 672 IPR003035 -
Lan8g1772 985 Coils Coil 584 604 - -
Lan8g1772 985 MobiDBLite consensus disorder prediction 801 820 - -
Lan8g1772 985 Pfam RWP-RK domain 604 652 IPR003035 -
Lan8g1772 985 MobiDBLite consensus disorder prediction 844 883 - -
Lan8g1772 985 PANTHER PROTEIN NLP8 8 983 IPR045012 GO:0003700
Lan8g1772 985 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 8 983 - -
Lan8g1772 985 ProSiteProfiles PB1 domain profile. 890 976 IPR000270 GO:0005515
Lan8g1772 985 MobiDBLite consensus disorder prediction 845 878 - -
Lan8g1772 985 SUPERFAMILY CAD & PB1 domains 882 974 - -
Lan8g1772 985 CDD PB1_NLP 891 971 IPR034891 -
Lan8g1772 985 Gene3D - 886 970 - -
Lan8g1772 985 SMART PB1_new 890 972 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1772 Lan-Chr8 24366271 24372189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1772 1 983 NLP Transcription Factor Family AT2G43500 47.956 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan8g1772 PB1 3.8e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1772 - - aprc:113864503 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2160 6 32034096 32040409 Lan8g1772 8 24366271 24372189 PCT
Lan8g1772 8 24366271 24372189 Lan6g2160 6 32034096 32040409 PCT