Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1766 ATGAAGATTCAGTGTGATGTGTGTGAGAAAGCTCCTGCAACTGTGATTTGTTGTGCTGATGAAGCAGCTTTGTGTGCCAAATGTGATATAGAAGTTCATGCTGCAAACAGGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAATGTCTTTCAAACAAGCTTCCCAAATGTGACATATGCCAAGATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTGTTCTGTAAGGATTGTGATGAACCAATTCATTCAGCCGGAAGCCTTTCTTCGAACCACCAGCGCTTCCTAGCTACTGGTATCCGAGTGGCACTGAGTTCGAATAGCATCAAAGGTAATGAAAAAAGTCACTCGGAAACATCTAATGCGAATGCACAACAAGTTCCGGTGAAAATTTCGTCTCAGCAAGTGCCTAGCTTCACTCCCTCTTGGTCTGTTGATGACTTATTGGAATTAACAGACTTTGAATCACCAGACAAAGAGTCCCTGGAGTTCGGAGAGCTGGAATGGCTAGCAGATGAGGGTCTTTTCAGTGAACAATTTCCTCAGGAAGCTTTAGCTGCAGCCGAAGTTCCTCAGCTTCCAGTAACACATACTAGCAGTGTTGCCTCATATAAAGCCTCTAAATCCTACAAAAAGCCTAGGATTGAAGTCCTAGATGAAGATGATGATGAGCACTGCACTGTTCCTGATCTTGGCTAA 705 0.4397 MKIQCDVCEKAPATVICCADEAALCAKCDIEVHAANRLASKHQRLLLQCLSNKLPKCDICQDKAAFIFCVEDRALFCKDCDEPIHSAGSLSSNHQRFLATGIRVALSSNSIKGNEKSHSETSNANAQQVPVKISSQQVPSFTPSWSVDDLLELTDFESPDKESLEFGELEWLADEGLFSEQFPQEALAAAEVPQLPVTHTSSVASYKASKSYKKPRIEVLDEDDDEHCTVPDLG* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1766 234 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Lan8g1766 234 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lan8g1766 234 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lan8g1766 234 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lan8g1766 234 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lan8g1766 234 Gene3D Classic Zinc Finger 1 93 - -
Lan8g1766 234 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 234 - -
Lan8g1766 234 CDD Bbox1_BBX-like 5 47 - -
Lan8g1766 234 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 234 - -
Lan8g1766 234 CDD Bbox1_BBX-like 56 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1766 Lan-Chr8 24330856 24333400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1766 1 161 Orphan Transcription Factor Family AT1G06040 66.667 1.83e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lan8g1766 zf-B_box 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1766 - - gmx:100779183 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0188 7 1150027 1151894 Lan8g1766 8 24330856 24333400 LSH
Lan6g2168 6 32106694 32110653 Lan8g1766 8 24330856 24333400 PCT
Lan10g0313 10 2074652 2077096 Lan8g1766 8 24330856 24333400 PCT
Lan8g1766 8 24330856 24333400 Lan6g2168 6 32106694 32110653 PCT
Lan8g1766 8 24330856 24333400 Lan10g0313 10 2074652 2077096 PCT