Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1756 ATGAAGCACTTTTTTATATCCACTGACACCTCACTCAATTCTCACTCGCCGCCGCTGAAAATGTCCACAACCACCGCTCCCTGCGGCGACTCTGTCTCCACGTTTCAAACTCCAACGCTCGACACAGAGTCTCATGAGCTCCTCCACTCCATTTCCGAGCACGGCGGTTACGCCTACGTGAGCATGGCGGCGATGGCAGCTGCCGGCGATTTCTGCGCCGCCGAAGCAGCACGGGAGATGGCGTGGGAGCAGCTGCACTCGGGGCCGTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCGATGGCGTGCCTCCACGTGGCGAAACATCACTATGAGAACGGAGAGTTCGAAAAATCGCTTAGGGTTTTGGACATGGGGATCATTATGGGAGGGACGCTCCTCGGAAAGGATCTGCACTATGCTGTTGGTAAGGTTTCTGAAAAAGCGAGGAGTGTTAGGGTTTCTGAGGGAAGATGTGAAGATTTGGAGAACTCCGAGAATCGACTTGTTGATCAAGAATTTGATGTATCTAAGGTGTTCCAACTTTTACCTGTCAAGTCCCTTACTTCTAAGATTGTGGTGAAGAGGTCCGCACTGTCATTGGAGGGGTTCCTGAAAGATCATTACCTGTCTGGCTCTCCGGTTATAATCAGTGATTGTATGGCTCACTGGCCGGCTAAAATGAAATGGAATAACATAGATTACTTGCAAAGAGTTGCTGGTGACCGCACCGTTCCAGTTGAGGTTGGGAAGAACTATTTATGTGCAGAGTGGAAGCAAGAGCTAATTACTTTTTCAGAGTTTCTTCAGCGGATAAGGTCAAATGGCTGTTCTCCTGGTGGTCCTACATATCTTGCTCAACATCCATTATTTGATCAGATAAATGAGCTTCGGAGAGATATCTTAATTCCTGACTATTGTTTTACTGGTGGGGGGGAGCTAAGATCTCTTAATGCTTGGTTTGGTCCAGCTGGAACGGTAACACCATTACATCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGGAAAAAATACATTAGGCTTTACTCTGCATCTTTTTCCGAGGAACTTTTCCCCTACCCTGATACCATGCTTTGCAATTCCAGCCAGGTTGACTTGGATGACATAGATGAAAGGAAGTTTCCTAAAGTGCAAGACCTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGCGCTCTTTAACTACTAGTTGCTCGGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCAGATGCATAA 1308 0.4755 MKHFFISTDTSLNSHSPPLKMSTTTAPCGDSVSTFQTPTLDTESHELLHSISEHGGYAYVSMAAMAAAGDFCAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKHHYENGEFEKSLRVLDMGIIMGGTLLGKDLHYAVGKVSEKARSVRVSEGRCEDLENSENRLVDQEFDVSKVFQLLPVKSLTSKIVVKRSALSLEGFLKDHYLSGSPVIISDCMAHWPAKMKWNNIDYLQRVAGDRTVPVEVGKNYLCAEWKQELITFSEFLQRIRSNGCSPGGPTYLAQHPLFDQINELRRDILIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASFSEELFPYPDTMLCNSSQVDLDDIDERKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSCSVSFWWSEGESSDA* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1756 435 Pfam Cupin-like domain 206 429 IPR041667 -
Lan8g1756 435 SUPERFAMILY Clavaminate synthase-like 199 428 - -
Lan8g1756 435 Gene3D Cupin 194 428 - -
Lan8g1756 435 SMART cupin_9 285 435 IPR003347 -
Lan8g1756 435 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 57 429 - -
Lan8g1756 435 PANTHER - 57 429 - -
Lan8g1756 435 ProSiteProfiles JmjC domain profile. 279 435 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1756 Lan-Chr8 24227990 24233066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1756 189 427 Acyl Lipid Metabolism Gene Families AT3G45880 24.830 1.74e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan8g1756 Cupin_8 2.1e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1756 K24444 - gmx:100813075 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1756 8 24227990 24233066 Lan13g0292 13 1893351 1898071 LSH