Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1754 ATGGAACCAGATCTTGGGCAGCACCCTCCCATGTTCTTGGATCAGCAACAGCAAATTAGTTCAGGCTTGACGCGATACCGGTCAGCTCCAAGTTCCTATTTTTCGAATATAATTGACAAGGAGTTCTATGAGAGCACATTCAATCGCCCCTCCAGCCCTGAAACAGAGCGAATTTTCGCTCGGTTCATGAATAATCTTAGTGGTAGCGGCGGTAGTGATGGTGGTGCAGAGGATTCGGTTTCTCAGAATATCCAACCTGGTCAGCAAGTCTCAGTAGTGAAGGAAGAGATTATTAATCAACAGTCTCATGATGTGCCTTCTATGAATAATGAACAAGTGCTTCTTCAGCAGCAGCAGCAGCAAAGCAATATCAACAATTATGGATCATCCACTCCTCAAAAAAATTACCAAAGTTCTGGACGACCACCTTTGCCAAATCATATGAAGACTGGTCGAGGAAGTACTTCGAATCTTATCCGACATGGTAGCTCCCCTGCTGGACTGTTTTCAACCATAAACATTGAAGGCTATACTGCTATAAGAGGCATAGGAACCATGGGAACTGCTAGTAGCACTAGTGAAAATGCAAACTTTTCTCCAGCGGCGAGGTTGAAGAATGCACAAAATTATTCGTCAGGGATAATGTTATCAAAAGCTGAAATCAGGAACGAAAGCAATGAACAAAACAATCAAGTTAAAGAAGCTTTTGCAGAAAGCCAGGGTAATGATTTCATCCCAGGTTTCCCTGTAAGTCCTTGGGATGAATCTTCAATCTTGCCTGACAATTTAGGTGGTGTAAAAAGACCTAGAGATGATGGTGACGATGATATAAAACCATTTTCCCGTATAAATGCAGCTGAAACACAGAATGAAACAGGAGGCGAACCTTCTGTTCCTTTGGCCCACCAGTTGAGTATGCCAAATACAACAATGGAAATGGCTGCCATTGAAAAGTTTCTGCAGTCATCAGATTCTGTCCCGTGGAAGATTCGCGCCAAGCGAGGCTTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAAGAAACTACAAGATCTGGTCCCCACCATGGACAATCAAACAAAAACAGCAGACATGTTGGACCTAGCTGTTGAGTACATTAAAGACCTTCAAAAACAAGTTCAGACTCTTTCAGAAAGTCGCGCTAAGTGTTCGTGTTCACACAAGCAACAACAATAA 1227 0.4287 MEPDLGQHPPMFLDQQQQISSGLTRYRSAPSSYFSNIIDKEFYESTFNRPSSPETERIFARFMNNLSGSGGSDGGAEDSVSQNIQPGQQVSVVKEEIINQQSHDVPSMNNEQVLLQQQQQQSNINNYGSSTPQKNYQSSGRPPLPNHMKTGRGSTSNLIRHGSSPAGLFSTINIEGYTAIRGIGTMGTASSTSENANFSPAARLKNAQNYSSGIMLSKAEIRNESNEQNNQVKEAFAESQGNDFIPGFPVSPWDESSILPDNLGGVKRPRDDGDDDIKPFSRINAAETQNETGGEPSVPLAHQLSMPNTTMEMAAIEKFLQSSDSVPWKIRAKRGFATHPRSIAERVRRTKISERMKKLQDLVPTMDNQTKTADMLDLAVEYIKDLQKQVQTLSESRAKCSCSHKQQQ* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1754 408 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 405 - -
Lan8g1754 408 Coils Coil 218 238 - -
Lan8g1754 408 SMART finulus 342 392 IPR011598 GO:0046983
Lan8g1754 408 MobiDBLite consensus disorder prediction 115 154 - -
Lan8g1754 408 Pfam Helix-loop-helix DNA-binding domain 342 387 IPR011598 GO:0046983
Lan8g1754 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 402 IPR036638 GO:0046983
Lan8g1754 408 Gene3D - 338 408 IPR036638 GO:0046983
Lan8g1754 408 Coils Coil 404 408 - -
Lan8g1754 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 386 IPR011598 GO:0046983
Lan8g1754 408 MobiDBLite consensus disorder prediction 259 279 - -
Lan8g1754 408 MobiDBLite consensus disorder prediction 265 279 - -
Lan8g1754 408 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1754 Lan-Chr8 24217352 24220304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1754 1 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.406 2.19e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g1754 HLH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1754 - - gmx:100803833 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0206 7 1282813 1286037 Lan8g1754 8 24217352 24220304 LSH