Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1752 ATGAATTCAAACAACTGGCTTTCCTTCCCTCTTTCTCCTACTCATTCTTCATTACCAGCTCATGATCTTCAAGCAACTCAATATCATCAATTTTCTCTTGGGTTAGTGAATGAGAATATGGAAAATCCTTTCCAAAATCACGATTGGAATCATTTTAATACTCACACCAATGATGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTGAGCAGGTCTGAAAATCAGTCAGATCTTGCTGCCATGAATGAAATTCAGCCAAATGAATCAGAATACCTTTTCACAAATAACAGTCTCGTCCCCATGCAAAACACAGTGGTGACATCATCTAGCAACTATGAGTATCAAGAATGTGGTAATAGTAATTTACAATCGTTGACATTATCAATGGGAAGTGGTAAGGACTTAAGTTCTGAAACTAGTGGTGACAATAGTACAAAGACTGTTGAAGCTGCACCTTCTAGAAGAACTTTGGATACCTTTGGGCAGAGAACATCAATATATCGTGGTGTAACAAGACATAGATGGACAGGAAGATATGAAGCTCACCTTTGGGACAATAGCTGTAGAAGGGAAGGACAATCAAGGAAAGGTCGCCAAGTCTATTTGGGCGGATATGACAAAGAAGAGAAAGCAGCTAGGTCTTACGATTTAGCTGCACTTAAGTACTGGGGAACATCCACCACCACTAATTTTCCAATCAGTAACTATGAGAAGGAAATTGATGAAATGAAGCACATGACAAGACAAGAATTTGTGGCCTCTATTAGAAGGAAAAGCAGTGGTTTCTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACATGGGAGATGGCAAGCAAGAATTGGAAGAGTTGCGGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAAGCTGCAGAAGCTTATGACATAGCTGCAATAAAGTTCAGAGGTCTTAACGCGGTAACTAACTTTGACATGAATCGTTATGATGTGAAAGCCATTCTTGAAAGCAACACTCTCCCAATAGGAGGTGGTGCTGCTAAACGACTAAAAGAAGCTCAAGCTCTTGAATCTTCAAGGAAACGTGATCAAGAAATGCTTGCACTTGGATCAAACTTTCAATATGGAACCTCAAGCTCTAGCAGCAGGCTACAACCTTATCCTCTAATGCAGCATTTTGAACAACCTCAACCATTGCTAACCCTACAAAACCATGACATGTCTCATCACTTCTCTCAAGATCCTTCTACACTACATCAGAGTTACCTCCAAACACAGCTTCAATTGCACCAGCAAAGTAGCTCTTCTTACATTCACCAATCAGCTCAGAATGCTCAATTCTATAACAGCTATGTTCAGAACCATCACCCAGCATTGCTTCATGGAATGATGAACATGGGTTCTTCTTCATCATCATCTTTGATGGAGAATGATAATAACACTATTGGTGGTTTCACTGGGAATGTTAATGCTGTGGGATCAGCAGAAGAGCTTGGGTTGGTTAAGGTTGATTATGACATTGACATGTCTTCCGGCAGTTACGGTGGCTGGTCGGCGGAGGGGACGGAGTCCATGCAGGCATCAACAGCTGGTGGCGGCGGCGGCGTGTTTAACATGTGGAGTGAATGA 1632 0.4167 MNSNNWLSFPLSPTHSSLPAHDLQATQYHQFSLGLVNENMENPFQNHDWNHFNTHTNDEVPKVADFLGVSRSENQSDLAAMNEIQPNESEYLFTNNSLVPMQNTVVTSSSNYEYQECGNSNLQSLTLSMGSGKDLSSETSGDNSTKTVEAAPSRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARSYDLAALKYWGTSTTTNFPISNYEKEIDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKRDQEMLALGSNFQYGTSSSSSRLQPYPLMQHFEQPQPLLTLQNHDMSHHFSQDPSTLHQSYLQTQLQLHQQSSSSYIHQSAQNAQFYNSYVQNHHPALLHGMMNMGSSSSSSLMENDNNTIGGFTGNVNAVGSAEELGLVKVDYDIDMSSGSYGGWSAEGTESMQASTAGGGGGVFNMWSE* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1752 543 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Lan8g1752 543 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700|GO:0006355
Lan8g1752 543 Gene3D AP2/ERF domain 166 234 IPR036955 GO:0003700|GO:0006355
Lan8g1752 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 542 - -
Lan8g1752 543 ProSiteProfiles AP2/ERF domain profile. 166 232 IPR001471 GO:0003700|GO:0006355
Lan8g1752 543 MobiDBLite consensus disorder prediction 128 152 - -
Lan8g1752 543 SUPERFAMILY DNA-binding domain 165 234 IPR016177 GO:0003677
Lan8g1752 543 CDD AP2 267 326 IPR001471 GO:0003700|GO:0006355
Lan8g1752 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 542 - -
Lan8g1752 543 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Lan8g1752 543 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Lan8g1752 543 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700|GO:0006355
Lan8g1752 543 CDD AP2 165 234 IPR001471 GO:0003700|GO:0006355
Lan8g1752 543 SMART rav1_2 268 332 IPR001471 GO:0003700|GO:0006355
Lan8g1752 543 SMART rav1_2 166 238 IPR001471 GO:0003700|GO:0006355
Lan8g1752 543 Pfam AP2 domain 269 318 IPR001471 GO:0003700|GO:0006355
Lan8g1752 543 Pfam AP2 domain 166 224 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1752 Lan-Chr8 24200376 24203764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1752 1 543 AP2-EREBP Transcription Factor Family AT1G51190 64.587 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan8g1752 AP2 5.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1752 K09285 - gmx:100170752 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1752 8 24200376 24203764 Lan13g0296 13 1924207 1927231 LSH