Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1749 ATGAGTTGGGGCCCAAATATGGAGGTGCATTACAATAACACCAGCTATCCCTATAATACTGCAGGGAGCTTTATTGAATATTTTGAAGGTCTTACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAGAGTTCCTACCCTTCAGCTTCAAGCTTTTACAAGTTTGGACTATCTGAAGTTGACAGCAATTCATACTATCGTTACAGTCATGGTGATGACTTAAGCCATCATCAATCACCAGTGGATGACTATAGGAGGCCTTTGGGAAACTCACCGGTAGTTAGTGAACAGACGACAACAGCAAGTACAGAATGGGGAGAAAGTGTAAACACTGATACACGAGACAATTCTATTGAGTGCCCACGAAGACATCATAGTAATTCCAATGATTATCAGGTCATTTGGCAAGACAGTATTGATCCTGATGACATGACCTATGAGGAACTACTTGAATTAAGCGAGGCTGTCGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATTTCCTTGCTTCCAGTTTCAAAGTACAAGTGTGGGTTCTTCTTGAGGAAAAAGTCACGGGATGAGAGATGTGTTATTTGCCAAATGGAATATAGAAGAGGGGACAAGCGGATCACTTTGCCATGTAAACACATGTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGTCCGATATGTTACACAGAGGTGTTTGCAGACAAGTCAAAACACAAATAA 747 0.4177 MSWGPNMEVHYNNTSYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSASSFYKFGLSEVDSNSYYRYSHGDDLSHHQSPVDDYRRPLGNSPVVSEQTTTASTEWGESVNTDTRDNSIECPRRHHSNSNDYQVIWQDSIDPDDMTYEELLELSEAVGTQSRGLTQEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYRRGDKRITLPCKHMYHASCGNKWLSINKACPICYTEVFADKSKHK* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1749 248 SMART ring_2 196 236 IPR001841 -
Lan8g1749 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Lan8g1749 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 242 IPR013083 -
Lan8g1749 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lan8g1749 248 MobiDBLite consensus disorder prediction 76 121 - -
Lan8g1749 248 Pfam Ring finger domain 195 236 IPR001841 -
Lan8g1749 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 - -
Lan8g1749 248 SUPERFAMILY RING/U-box 195 243 - -
Lan8g1749 248 MobiDBLite consensus disorder prediction 96 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1749 Lan-Chr8 24176116 24179708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1749 5 247 C3H Transcription Factor Family AT3G63530 42.276 2.03e-62 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1749 K19045 - gmx:100793907 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0211 7 1317948 1321797 Lan8g1749 8 24176116 24179708 LSH