Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1731 ATGAACACTGATACCCGTGAAACGCTGTCGTATTGGTGCTTCAACTGCACCCGCTACGTTCACGTTGTGAACCACAACAACATCACTTGTCCTCACTGCGAAACCGGTTTCATCGAACGGATCCAACCCGATCCATCACCCAATCACCCTCTCACTCCTTTCCCCGACGAGTCAACGTTGACCAGACCAGCCATCCGCCGGAGACACCGTAACGTCACCATCCACTCGCCGATCAACCCTGTCATCGTTCTCCGTTCACATGGACACGTCAGCGCCGGCTACGACGATACCGTCTTCGAATTGTACCACGACGACGGCAACGGTCTCCGTCCCTTGCCGACTGCTATGTCGGATTTCTTGTTAGGATCTGGTTTCAATAGCTTGTTGCAGCAGTTTTCTCAGGTCGAGGTGAACGGGTTTGATAGGCCGGAGAATCCGCCGGCGTCAAAGGCAACGATCGAATTGATTCCGACGATCGCGATCGAAGAATCGCACATATGTACCGAATCACACTGTGCGGTTTGCAAAGAAGAGTTCGAGCTTGGTTCCGAAGCGCGTGAGTTACCGTGCAAGCATATTTACCACTCCGATTGCATTCTTCCATGGCTATCGTTGCGAAACTCATGTCCTGTGTGCCGCAGCGAGCTTCCTTCGGCTCAGAATCCTCAAGTTTCCAGTGAAATCGATGAAGAATCGACCGGGTTCACGATTTTGAGGCTGCCAGGCGGAGGAATTGCCGTCGGTAGGTTTTCCGGTAGCCGGAGAACCAGCGAGAGTCGGTTACCGGCTTTGTACACCGAAATGGAACGTGCAATGAATAATAGAAGTGGAACTTCGATCAGTATTTCGCGCACAGCGAGAAGGAATAGGGTTAGGGAAAGTGGCATTGTTCGTAGGGCTTTTCGTAATTTCATATCATTCTTTGGTTTTAGCTCTTCATCTCGGAGTAGAAGACTTAGCTCATTGAGTTCTCTATTCAATAGAGGAAGCAGAACGTTTGTCATAGAAGTTTAA 1014 0.503 MNTDTRETLSYWCFNCTRYVHVVNHNNITCPHCETGFIERIQPDPSPNHPLTPFPDESTLTRPAIRRRHRNVTIHSPINPVIVLRSHGHVSAGYDDTVFELYHDDGNGLRPLPTAMSDFLLGSGFNSLLQQFSQVEVNGFDRPENPPASKATIELIPTIAIEESHICTESHCAVCKEEFELGSEARELPCKHIYHSDCILPWLSLRNSCPVCRSELPSAQNPQVSSEIDEESTGFTILRLPGGGIAVGRFSGSRRTSESRLPALYTEMERAMNNRSGTSISISRTARRNRVRESGIVRRAFRNFISFFGFSSSSRSRRLSSLSSLFNRGSRTFVIEV* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1731 337 Pfam zinc-ribbon 10 41 IPR039525 GO:0061630
Lan8g1731 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 6 293 - -
Lan8g1731 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 293 - -
Lan8g1731 337 SMART ring_2 172 212 IPR001841 -
Lan8g1731 337 SUPERFAMILY RING/U-box 153 219 - -
Lan8g1731 337 CDD RING-H2_RNF126_like 172 213 - -
Lan8g1731 337 Pfam Protein of unknown function (DUF1117) 234 321 IPR010543 -
Lan8g1731 337 Pfam Ring finger domain 171 213 IPR001841 -
Lan8g1731 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 219 IPR013083 -
Lan8g1731 337 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1731 Lan-Chr8 24078358 24079522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1731 111 218 C3H Transcription Factor Family AT5G01980 43.519 1.30e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1731 - - gmx:100804867 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0227 7 1406630 1407994 Lan8g1731 8 24078358 24079522 LSH
Lan6g1987 6 30740158 30741361 Lan8g1731 8 24078358 24079522 PCT
Lan8g1731 8 24078358 24079522 Lan6g1987 6 30740158 30741361 PCT