Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1724 ATGGGTATGGCCAATGTTTTGCTCTGCATTGCTTCCATTATGTTCTTATTAATGTGGATCCGTGTTGAAGCACGAATTCCAGGTGTTTACTCTGGTGGTGCTTGGCAAGGTGCTCATGCTACTTTCTATGGTGGTTCTGATGCTTCTGGCACCATGGGAGGGGCGTGTGGGTATGGGAATCTGTATAGCCAAGGTTATGGTGTGAGCACAGCGGCACTAAGCACAGCACTTTTCAACAATGGTCTAAGCTGTGGTGCATGTTTTGAGATCAAGTGTGCAAATGATAGAGAATGGTGTCACTCTGGAAGCCCTTCAATCTTTATTACAGCAACTAACTTTTGTCCTCCAAACTTTGCTCTTCCAAACGACAATGGTGGGTGGTGCAACCCTCCACGACCACACTTTGACCTTGCCATGCCCATGTTCCTCAAGATTGCTGAGTACCGTGCCGGAATCGTTCCCGTTGCTTATCGCCGGGTGCCATGCAGAAAGAATGGAGGGATCAGATTCACCGTTAACGGTTTCCGTTACTTCAACCTGGTTTTAATCACCAACGTTGCGGGTGCAGGTGATATCACACGCGCCTACGTGAAGGGCTCTCGAACCAGTTGGATGCCACTGAGCCGAAACTGGGGTCAGAATTGGCAATCAAATGCGGTTTTAGTGGGCCAGGCCTTGTCTTTTCGTGTCACTGGAAGTGATCGACGCACCTCTACTTCTTGGAACATTGCACCATCTAATTGGCAATTTGGTCAAACTTTCACTGGAAAAAATTTCAGGATCTAA 786 0.4784 MGMANVLLCIASIMFLLMWIRVEARIPGVYSGGAWQGAHATFYGGSDASGTMGGACGYGNLYSQGYGVSTAALSTALFNNGLSCGACFEIKCANDREWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKNGGIRFTVNGFRYFNLVLITNVAGAGDITRAYVKGSRTSWMPLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPSNWQFGQTFTGKNFRI* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1724 261 SMART dpbb_1 70 157 IPR007112 -
Lan8g1724 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Lan8g1724 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Lan8g1724 261 PANTHER EXPANSIN-A15 5 260 IPR002963 GO:0009664
Lan8g1724 261 Gene3D - 164 259 IPR036749 -
Lan8g1724 261 PANTHER EXPANSIN 5 260 - -
Lan8g1724 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Lan8g1724 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Lan8g1724 261 Gene3D - 24 163 IPR036908 -
Lan8g1724 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Lan8g1724 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Lan8g1724 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Lan8g1724 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Lan8g1724 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Lan8g1724 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Lan8g1724 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Lan8g1724 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Lan8g1724 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Lan8g1724 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Lan8g1724 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Lan8g1724 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Lan8g1724 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Lan8g1724 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Lan8g1724 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Lan8g1724 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Lan8g1724 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1724 Lan-Chr8 24028594 24031181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1724 6 261 Expansin Gene Family AT2G39700 83.984 1.16e-162 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1724 - - gmx:100809139 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0236 7 1472596 1474634 Lan8g1724 8 24028594 24031181 LSH
Lan8g1724 8 24028594 24031181 Lan13g0326 13 2141333 2146475 LSH
Lan6g1981 6 30695752 30698144 Lan8g1724 8 24028594 24031181 PCT
Lan8g1724 8 24028594 24031181 Lan6g1981 6 30695752 30698144 PCT