Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1718 ATGGAGCACATAGTGCAGAGTTTGATTGAATCGGTGAATGAAATAGCTGCGATCTCTGATTACAAACCTATGGTGAAGAAACAGTACTGCAACTTGGCGCGTAGATTGAAGCTTTTGACTCCGATGTTCGAAGAAATTAGGGAACTGAACAAAGAAGGTATCCCTCTCGATACTTTGAAACCCTTGCTAGCTTTCAAGGAAGCTCTTCAATCAGCTAAGGAACTTCTCAGATTTGGAAGTGAAGGAAGCAAGATTTACATGGTACTTGAGATGGACCAAATTATGAATAAGTTCCATAAGGTGACAGATAAGTTGGAACAAGCATTGGTTGGAATTTCATGTGATAAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAGCTAGTTCTTGCCCAGTTTAGAAGAGCAAAAGGGAGAATCGATGAACCTGATGTCAAATTGTATGAGGATCTGCTGTCACTTTACAACAAGAACAATGATGCTGATACAGATCCAGCAGTTCTAAATCAAATTGCTGAAAAATTGCAATTAAAGGGAGTAGCCGATCTTATACAAGAATCACTTGCTTTGCAGGAGATGGTGGCGGCAAACAGTGGAGATCCAGGGGCACACATTGAGAAAATTTCGATTTTGTTGAAGAAGATAAAATATTATGTGCAAACAGAAAATCTCGTCATGGATGATAATGTAGGAGGTAGAGACCTTTCTTCAAGTGTCTGCAGTAAAGGGACAAATGAAAAGAATCATCAGGCTCCTGTTATTCCTGATGATTTTCGATGTCCAATTTCCTTGGAATTGATGAGGGATCCTGTTATTGTTTCAACTGGACAGACTTATGAGCGTTCTTGTATTGACAAGTGGTTGCAAGCAGGGCATGGGACTTGCCCAAAAACACTGCAAACCCTCACTAGTAGTGTTCTCACACCTAACTATGTCTTACGAAGCCTCATCGCGCAATGGTGTGAAGCCAATGGCATTGAACCGCCAAAGCGACCCAACAGTTCTCAACCTAGTAAATCAGCATCAGCCTACTCCCCAGCTGAGCAAAGTGAGATTGAAAATCTTATGCAAAAGCTCACCTTCGGCAGTCCTGAAGACCAAAGATCAGCTGCGGGAGAGATCCGCCTTCTTGCTAAGCGAAATGCAGATAACCGTGTGGCCATTGCCAAAGCTGGTGCAATACCTCTCCTCGTTGGTCTCCTCACCATTCCTGACTCCCGCACTCAAGAGCATGCTGTGACAGCACTTCTGAATCTTTCCATATATGAAACTAATAAAGGAAGCATTGTATCTTCTGGGGCAGTTCCAGGCATAGTTCATGTGCTGAAAAAAGGAAGCATGGAAGCTCGGGAAAATGCGGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTATAATTGGTTCTTCTGGGGCCATACTACCACTAGTGTCATTGCTGAGTGAGGGTACGCAAAGGGGTAAAAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATCTACCAGGGTAACAAGGGAAAGGCTGTGAGGGCTGGCGTTATTCCCACACTGATGCAACTGCTGACAGAACGTGGGGGGGCAATGGTGGATGAAGCATTGGCCATTTTGGCAATATTGGCTAGCCATTCTGAAGGAAAGGCTGCCATTGGTTCTGCGGAGGCAGTGCCGGTTTTGGTAGAATTTATTGTGAATGGATCTCCAAGGAACAAAGAAAACTCAGCTGCCGTTTTAGTGCACCTTTGTTCTGGAGATCAACAACATCTAGCACATGCCCAAGAGCTTGGGGTGATGGGTCCATTGTTGGAAATGGCTCAAAATGGTACAGATAGAGGCAAAAGAAAGGCAGCACAATTGCTAGAGCGTATGAGCAGGTTCCTTGACCAGCATCAGCAACAGGAGGATGAAGTTCAAACGCAAACCGAAATTTAA 1941 0.4379 MEHIVQSLIESVNEIAAISDYKPMVKKQYCNLARRLKLLTPMFEEIRELNKEGIPLDTLKPLLAFKEALQSAKELLRFGSEGSKIYMVLEMDQIMNKFHKVTDKLEQALVGISCDKLDISDEVKEQVELVLAQFRRAKGRIDEPDVKLYEDLLSLYNKNNDADTDPAVLNQIAEKLQLKGVADLIQESLALQEMVAANSGDPGAHIEKISILLKKIKYYVQTENLVMDDNVGGRDLSSSVCSKGTNEKNHQAPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIDKWLQAGHGTCPKTLQTLTSSVLTPNYVLRSLIAQWCEANGIEPPKRPNSSQPSKSASAYSPAEQSEIENLMQKLTFGSPEDQRSAAGEIRLLAKRNADNRVAIAKAGAIPLLVGLLTIPDSRTQEHAVTALLNLSIYETNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVIIGSSGAILPLVSLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMQLLTERGGAMVDEALAILAILASHSEGKAAIGSAEAVPVLVEFIVNGSPRNKENSAAVLVHLCSGDQQHLAHAQELGVMGPLLEMAQNGTDRGKRKAAQLLERMSRFLDQHQQQEDEVQTQTEI* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1718 646 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 638 - -
Lan8g1718 646 MobiDBLite consensus disorder prediction 328 348 - -
Lan8g1718 646 Gene3D - 1 114 IPR036537 GO:0007166
Lan8g1718 646 Gene3D - 342 529 IPR011989 -
Lan8g1718 646 Gene3D - 530 646 IPR011989 -
Lan8g1718 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Lan8g1718 646 CDD RING-Ubox_PUB 259 301 IPR045210 -
Lan8g1718 646 SUPERFAMILY ARM repeat 353 632 IPR016024 -
Lan8g1718 646 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Lan8g1718 646 SUPERFAMILY RING/U-box 247 331 - -
Lan8g1718 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Lan8g1718 646 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Lan8g1718 646 MobiDBLite consensus disorder prediction 330 348 - -
Lan8g1718 646 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Lan8g1718 646 Coils Coil 619 639 - -
Lan8g1718 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Lan8g1718 646 PANTHER U BOX DOMAIN-CONTAINING 3 638 - -
Lan8g1718 646 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Lan8g1718 646 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Lan8g1718 646 SMART arm_5 588 628 IPR000225 GO:0005515
Lan8g1718 646 SMART arm_5 464 504 IPR000225 GO:0005515
Lan8g1718 646 SMART arm_5 382 422 IPR000225 GO:0005515
Lan8g1718 646 SMART arm_5 546 586 IPR000225 GO:0005515
Lan8g1718 646 SMART arm_5 505 545 IPR000225 GO:0005515
Lan8g1718 646 SMART arm_5 423 463 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1718 Lan-Chr8 23999594 24004094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1718 6 635 U-box Gene Family AT3G46510 69.716 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1718 - - gmx:100812160 997.653