LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan8g1695	ATGTTCGATCTCAATCTAAATTCGGACTTGGCCGATTCAACTAAGAATTGCAACTCAGTGCAGTTGATGGAAAAGTTTCCAGAAGATTACTGTAACAAAATGGCGGAATCAGCAACATCGAATTCCTCCGTGGTCAATGCGGACGGGTCCAGCAACGACGACTCGTACTCCACACGCGCCGAAGAAGCCTTCACCGTCGATTTCGGTATCCGTAAGGCAGAAGGAAGAAACGACGTCGTAACTATGGAGCTCTTTCCTGTTAATGAAGTGGAAGGTGTTTTATTCGGGAACTGGAATCAAACGTCGTCGTTTGATCGTCAAAGCGTGACGAAGGTGGTTCAGGTTGAGGAACAACCTCAACCGCCGCAAGTGAAAAAGAGCAGAAGGGGACCAAGGTCTCGGAGCTCGCAGTACAGAGGAGTCACCTTCTATAGAAGAACCGGAAGATGGGAATCACATATCTGGGATTGCGGGAAGCAAGTCTATTTAGGTGGATTTGACACTGCTCATGCAGCTGCTAGAGCCTATGATCGAGCTGCTGTTAAGTTCCGGGGAATTCGTGCAGACATCAATTTCAGTCTGAGTGATTATGAGGATGATCTTAAACAGATGAAGAATCTATCCAAAGAGGAATTTATTCATATATTGCGTCGTCAAAGCACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTGACACTCCACAAATGTGGACGTTGGGAGGCTCGAATGGGACAATTCCTTGGTAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTATATATGAAGGGGAGATGAAGTCTGCAGCTAATAACGAAAGTAGCAGTCACAATCTTGACCTCAATTTGGGCATGGCGACCCCAGGACACGGTGTCAAAGAAAAGAGGATGGACACAAATGTTAATTCAATAATTGGTAATTCATCTTCAAAAAGGCTGGTTGTAACTGAAAACTCTTCCATATGGAATGGCATGAATCCTAGTTTCTTTCCCAATCAGGAAAGAGTGGGCAAATTCAGCATAGATCCTTCAAAAGGACACCCCAGCTGGGCCTGGCAAATGCATGGCCAAGTCACAGCTACCGTAGTACCACCGTTCTCTGCCGCAGCATCATCAGGATTCTCAATTTCAGCTCTGCCTCCATCGAGTTCTATCTTTCCAAAAAAACATGCATACTCAATTCCGCAAAGTCTCTGTTTTTCGTTATCCAGCACACATAGTAGCAATGCGTCTCAATATTGCCAGGTTAAGCCCCCACAGGCACCACAGTAG	1356	0.455	MFDLNLNSDLADSTKNCNSVQLMEKFPEDYCNKMAESATSNSSVVNADGSSNDDSYSTRAEEAFTVDFGIRKAEGRNDVVTMELFPVNEVEGVLFGNWNQTSSFDRQSVTKVVQVEEQPQPPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGIRADINFSLSDYEDDLKQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSIYEGEMKSAANNESSSHNLDLNLGMATPGHGVKEKRMDTNVNSIIGNSSSKRLVVTENSSIWNGMNPSFFPNQERVGKFSIDPSKGHPSWAWQMHGQVTATVVPPFSAAASSGFSISALPPSSSIFPKKHAYSIPQSLCFSLSSTHSSNASQYCQVKPPQAPQ*	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan8g1695	451	SUPERFAMILY	DNA-binding domain	136	194	IPR016177	GO:0003677
	Lan8g1695	451	Pfam	AP2 domain	228	278	IPR001471	GO:0003700\|GO:0006355
	Lan8g1695	451	Pfam	AP2 domain	137	185	IPR001471	GO:0003700\|GO:0006355
	Lan8g1695	451	ProSiteProfiles	AP2/ERF domain profile.	229	286	IPR001471	GO:0003700\|GO:0006355
	Lan8g1695	451	PRINTS	Ethylene responsive element binding protein signature	268	288	IPR001471	GO:0003700\|GO:0006355
	Lan8g1695	451	PRINTS	Ethylene responsive element binding protein signature	230	241	IPR001471	GO:0003700\|GO:0006355
	Lan8g1695	451	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7	1	414	-	-
	Lan8g1695	451	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	414	-	-
	Lan8g1695	451	MobiDBLite	consensus disorder prediction	115	138	-	-
	Lan8g1695	451	CDD	AP2	137	192	IPR001471	GO:0003700\|GO:0006355
	Lan8g1695	451	Gene3D	AP2/ERF domain	228	287	IPR036955	GO:0003700\|GO:0006355
	Lan8g1695	451	Gene3D	AP2/ERF domain	136	195	IPR036955	GO:0003700\|GO:0006355
	Lan8g1695	451	CDD	AP2	228	288	IPR001471	GO:0003700\|GO:0006355
	Lan8g1695	451	SMART	rav1_2	229	292	IPR001471	GO:0003700\|GO:0006355
	Lan8g1695	451	SMART	rav1_2	137	199	IPR001471	GO:0003700\|GO:0006355
	Lan8g1695	451	SUPERFAMILY	DNA-binding domain	228	288	IPR016177	GO:0003677
	Lan8g1695	451	ProSiteProfiles	AP2/ERF domain profile.	137	193	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan8g1695	Lan-Chr8	23821281	23825344	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan8g1695	43	348	AP2-EREBP Transcription Factor Family	AT4G36920	57.862	2.79e-100	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Lan8g1695		AP2	2.6e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan8g1695	K09284		-	gmx:100777102	545.428

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan6g1957	6	30502904	30506803	Lan8g1695	8	23821281	23825344	PCT
	Lan10g0117	10	707245	711733	Lan8g1695	8	23821281	23825344	PCT
	Lan8g1695	8	23821281	23825344	Lan6g1957	6	30502904	30506803	PCT
	Lan8g1695	8	23821281	23825344	Lan10g0117	10	707245	711733	PCT