Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1692 ATGGCCGGCGTGAATCCGAACGACGATGCGGTAGATTTTCCGGCGATGCCAACGCACGGAGGAAAGTTCATCCAGTACAATATATATGGCAATCTGTTCAAAGTTACAGCGAAGTATCGCCCTCCGGTCATGGCTGTTGGTCGCGGCGCCCATGCACTCGTTTGCTCGTTGTTGAATACCGAGACAAATGAGTTGGTGGCAATTAAGAAGATAATGAATGCTTTCGACAATCCCATGGACGCTGAGCGTATACTACGTGAGATTAAACTTCTTAGGCATTTGGATCATGAAAATATAATTGCCTTCAGAGATGTTATTCCTCCACCTTTACGTAGAGAGTTTACTGATGTCTACATAGTCACGGAACTTATGGGTACTGATCTTCACAACGTTATTCGCTCCAATCAAAATCTATCAGAGGAACACTGCCAGTACTTCCTGTATCAGGTTCTTCGTGGATTGAAGTACATACATTCTGCAAACATAATCCATAGAGATTTGAAACCAAGGAACTTGTTGCTGAATGGAAATTGTGACTTGAAAATTATTGATTTTGGTATGGCACGGCCAGCTTCAGAGAGTGGCTGCATGACCGAATATGTTGTCACAAGATGGTATAGGGCTCCAGAATTGTTGTTGAACTCTTCAGATTACACTTCTGCCATAGATGTGTGGTCTGTTGGCTGCATCTTTATGGAGCTTATGAATAAAAAGCCTCTGCTTCCTGGCAAAGATCATGTGCATCAGATGCGCCTATTGACAGAGCTTCTTGGCACTCCAACTGAGGCTGACCAGTGGTTAGTGAAAAATGAGGATGCGAGAAGATATATTCGACAACTACCTCAATTTCCTCGCCAACCTTTAGCTGAGGTCTTCCCCCATGTTCACCCCTTAGCCATGGATCTCGTTGATAAAATGTTGACAATTGATCCGACTAAAAGAATTACAGCTGAAGAAGCTCTAGCCCATCCATACCTTGCAAAATTGCATGATGAAGGTGATGAACCAGTCTGTACGGAGCCTTTCTCATTTGAATTTGAGCACCAACAATTGGATGAAGAGCAGATACAAGACATGATTTACAGGGAAGCATTGGCACTCAATCCTGAGTATGCATAA 1119 0.4343 MAGVNPNDDAVDFPAMPTHGGKFIQYNIYGNLFKVTAKYRPPVMAVGRGAHALVCSLLNTETNELVAIKKIMNAFDNPMDAERILREIKLLRHLDHENIIAFRDVIPPPLRREFTDVYIVTELMGTDLHNVIRSNQNLSEEHCQYFLYQVLRGLKYIHSANIIHRDLKPRNLLLNGNCDLKIIDFGMARPASESGCMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLLPGKDHVHQMRLLTELLGTPTEADQWLVKNEDARRYIRQLPQFPRQPLAEVFPHVHPLAMDLVDKMLTIDPTKRITAEEALAHPYLAKLHDEGDEPVCTEPFSFEFEHQQLDEEQIQDMIYREALALNPEYA* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1692 372 Gene3D Transferase(Phosphotransferase) domain 1 124 353 - -
Lan8g1692 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 371 - -
Lan8g1692 372 Gene3D Phosphorylase Kinase; domain 1 23 363 - -
Lan8g1692 372 SMART serkin_6 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1692 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 371 - -
Lan8g1692 372 ProSiteProfiles Protein kinase domain profile. 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1692 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Lan8g1692 372 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Lan8g1692 372 Pfam Protein kinase domain 45 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g1692 372 SUPERFAMILY Protein kinase-like (PK-like) 45 332 IPR011009 -
Lan8g1692 372 ProSitePatterns MAP kinase signature. 75 178 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1692 Lan-Chr8 23793634 23796370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1692 11 372 MAP Kinase Gene Family AT3G45640 77.624 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lan8g1692 Pkinase 4.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1692 K20536 - gmx:547530 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0273 7 1752510 1755430 Lan8g1692 8 23793634 23796370 LSH
Lan8g1692 8 23793634 23796370 Lan13g0360 13 2399053 2402740 LSH